Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00156 ATGCATCCGCTTTTCTTTTGGCCTTCAATGACCCATCTGCGGCCAAGCTTTGTAGAGAAGGGATACTTCGAGGATTTAGCAACAAGCGCCTTCCAACTTCCTCTCCTCCATCCTTGCACAGCCCCAATAACAGTCCCTTCTGAGCAACCCATAACCAGGGAGAGCGCCTGCAAGGCTTCATCTGTTATGCCTGCCTTGTCATCTGTTAGCAAGTCAATCAGCAATGGGACTGCCCCAGAAACTACGATACAAGCTTTGTTGGCACTATTGCAAAGTGCAGTGGTGGCATCTCGCTTCCCGACTGGATTGCCGTCCTTCAGGAGCCTCACCAATGCTGGTATGGCTTTCGGACTCGCCCCTATTGTTATTTTGAACTCGTCTACCATGGTTAGGCTAAATAATGTTGCTGCAGCATTTTCTCTTGCTTCCATCGTTTTCCCTGATTCTAAGATGTGTGTTATGTTGTCTATCGCCCCTGCTGCCACTATCAGGATCTTGTTGTTGTTGAAGATTGCAAGGTTGAACAATGCAGTCACTGCATTTTCTTCGATCCTTGGATCACCGGATTTCAACAGCGTCACCAGAAACGGTATTGCTCCTGCTTCGGCAATCATCCTTCGCAGAGACCCAGAAGGCAAAAGGCTTGAAGAAGCTGCCATCATTGGGGAAAGAGCAACATCCATGGCCGAAGGAGCAGCCATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACATGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCCAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCCGAGGAGCAGAGAGAGGACACTGTGAACTCCTTGGCTTATGAGGCTGAGGCCAGGCTGAGGGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGTCTTGCTCGTTATGCTGATTCTGATCATAATTATAGCACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATCTAAAGCTTGA 1239 47.46 MHPLFFWPSMTHLRPSFVEKGYFEDLATSAFQLPLLHPCTAPITVPSEQPITRESACKASSVMPALSSVSKSISNGTAPETTIQALLALLQSAVVASRFPTGLPSFRSLTNAGMAFGLAPIVILNSSTMVRLNNVAAAFSLASIVFPDSKMCVMLSIAPAATIRILLLLKIARLNNAVTAFSSILGSPDFNSVTRNGIAPASAIILRRDPEGKRLEEAAIIGERATSMAEGAAMRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDHNYSTFSSSSSSSSSMGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPSKA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 724698 728392 - CmoCh15G001560.1 Cmo15g00156 397664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00156 412 ProSiteProfiles LOB domain profile. 244 345 IPR004883 -
Cmo15g00156 412 Pfam Lateral organ boundaries (LOB) domain 245 342 IPR004883 -
Cmo15g00156 412 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 234 369 - -
Cmo15g00156 412 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 234 369 - -
Cmo15g00156 412 Coils Coil 324 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00156 Cmo-Chr15:724698 Cmo05g00781 Cmo-Chr5:4480338 8.62E-47 dispersed
Cmo15g00156 Cmo-Chr15:724698 Cmo11g01668 Cmo-Chr11:11836728 1.87E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11115 PF03195 LOB 2.90E-38 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00156 - - cpep:111808214 326.25