Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00160 ATGACACCAGAGACGATCGAGAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACGCTCGCTAAGTGGAAGGCTTATAACGAATGTGCTGATTCTTGTAATGATGAAGACAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCGCAATGCAAATATAGAGGTGTGAGGCAGAGAACATGGGGCAAATGGGTTGCAGAGATCCGTGAACCCAACAGAGGGAGTAGGCTGTGGCTTGGTACCTTCCCGACAGCCACCGAAGCTGCCCTTGCCTACGACGAGGCTGCGAGGACGATGTACGGCGAGACAGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAGCTACAGGGGATTCTTTTGGAGGATTACTTGGGGCTGCGGAACTCTGATTCTTCAACCGCTACTTCCACATGTTCTGGATCGACAATCACGACGTCAAACCAATCTGAGGTCTGTGTGCCTGGGGAGTTCGCACTGTGGCCACCCTCAAATATCAAGATTGAAGATGGAGAAGGCGAGTCGAGGACCTGGGATCACTCCAGTCACGCTCCGACTCCGATGTGCTTAGAGAAGCCAGTGAAACATGAAGATGTAGCTAAATATCTCGAGCATCACAATAATCAAACAGTTCTACCGGATACTGAGTTACCTAGTTGGGATCAGCTGCAGAATTTTCAAATGGACGTGATGTTTGAGCCGAGAATCGGGGATCAGGCCGATGACACTGCGAAGCCGATGAGCATGGAGAAGAAGCAAGTGAAAAATGAAGATAACGATGCTAAACATCTGGATCAGAGAAATGATCAAACAGTCTCATCAGGGACCGAGATTCCTGGTGTGGATGACTTGCAAAACTTCCAGATGGATGAGATGTTCGATGTGGACGAGCTTCTAGGCCTGATAAATGGTGATTGCTTGTATGATCCAAGCATCTTGCAGGGCAATGTAGATGGTTTTAACAGCACAGCGCCTTCCCAAGTCCGCGATCACGGGTCTGAAAAGGCATCAAGTTTGTCATATCAGTTCCAAAACCCCGACGCGAAGCTGCTCGGAAGCCTCCAACACATGGAGCAATCTCCGTCGGATGTCGACTACAGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATGTGAATGCCGCAGCAGATGAGTACATAAGATACCTGAATTATGAGATGGATGATATGGGATTTTGA 1257 48.69 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECADSCNDEDKPIRKAPAKGSKKGCMKGKGGPLNSQCKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTATEAALAYDEAARTMYGETARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSGSTITTSNQSEVCVPGEFALWPPSNIKIEDGEGESRTWDHSSHAPTPMCLEKPVKHEDVAKYLEHHNNQTVLPDTELPSWDQLQNFQMDVMFEPRIGDQADDTAKPMSMEKKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINGDCLYDPSILQGNVDGFNSTAPSQVRDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPSDVDYRFDFLKQGREEDVNAAADEYIRYLNYEMDDMGF 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 737528 739804 - CmoCh15G001600.1 Cmo15g00160 397668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00160 418 MobiDBLite consensus disorder prediction 257 301 - -
Cmo15g00160 418 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 319 - -
Cmo15g00160 418 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677
Cmo15g00160 418 MobiDBLite consensus disorder prediction 257 286 - -
Cmo15g00160 418 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 319 - -
Cmo15g00160 418 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 CDD AP2 69 128 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Cmo15g00160 418 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00122 Cmo15g00160 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00452 Cmo-Chr14:2186213 Cmo15g00160 Cmo-Chr15:737528 5.87E-26 dispersed
Cmo15g00160 Cmo-Chr15:737528 Cmo20g00602 Cmo-Chr20:2956077 6.42E-46 dispersed
Cmo15g00160 Cmo-Chr15:737528 Cmo03g00335 Cmo-Chr3:4461152 5.56E-42 wgd
Cmo15g00160 Cmo-Chr15:737528 Cmo04g03016 Cmo-Chr4:21184855 1.43E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11116 PF00847 AP2 5.50E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00160 - K09286 cpep:111808198 770.77