Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00170 ATGCCTGAATGTCAAGAGAAAGGTAAAGAATTGCAGGAGGTTGATGAGATAAAGAGGGAGGTGGTTGAAGGGTTTTATCCATTAATGGGAAGAAGGCAGATATTGAGTCAAGCTGGGGCGCTGAATACCATAACGCCATGTGCGGCCTGTAAGCTATTAAGAAGAAGGTGCGCTCAAGAATGCCCATTTTCTCCATATTTCTCTCCGCATGAACCCCACAAGTTTGCTTCGGTTCATAAGGTTTTTGGTGCCAGCAACGTGGCTAAGATGCTCATGGAAGTGCCGGAGAGTCAAAGAGCGGACGCCGCAAACAGCCTGGTGTATGAAGCCAATCTGAGGCTGAGGGATCCAGTGTACGGCTGCATGGGCGCCATTTCTGCTCTCCAACACCAACTTCAAACCTTACAAGCTGACCTCAACGCTATAAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATCATCCCTTCTCCTTCCTCCTCTTCCTCTTCCCACATCGCTTTCATTTCCGCTACCGGGCTCGTATCCACCACCGCAACCCCGCCTACTGCCCCGCCAACTCCGCCGCCTTCTCAGCCACCTCCGCTCTCTCTTCCCCCGCCTCTTCCTCCCTCCTCCTCCTCCTCCATCTTTTCTCCGCCCATCAGCACCACCACTGCCCCTCAACTAATTAACCCTATCTCAACCCAACATATTCCTTACTTTGGTTAA 714 50.7 MPECQEKGKELQEVDEIKREVVEGFYPLMGRRQILSQAGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQADLNAIRTEILKYKYREAIIPSPSSSSSSHIAFISATGLVSTTATPPTAPPTPPPSQPPPLSLPPPLPPSSSSSIFSPPISTTTAPQLINPISTQHIPYFG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 784533 786311 - CmoCh15G001700.1 Cmo15g00170 397678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00170 237 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Cmo15g00170 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 237 - -
Cmo15g00170 237 MobiDBLite consensus disorder prediction 210 224 - -
Cmo15g00170 237 MobiDBLite consensus disorder prediction 178 224 - -
Cmo15g00170 237 PANTHER BNAA03G19070D PROTEIN 29 237 - -
Cmo15g00170 237 MobiDBLite consensus disorder prediction 182 209 - -
Cmo15g00170 237 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Cmo15g00170 237 Coils Coil 125 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01140 Cmo15g00170 CCT
Cmo04g01140 Cmo15g00170 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00110 Cmo-Chr4:579883 Cmo15g00170 Cmo-Chr15:784533 4.68E-65 dispersed
Cmo15g00170 Cmo-Chr15:784533 Cmo20g01156 Cmo-Chr20:11332397 1.90E-46 dispersed
Cmo15g00170 Cmo-Chr15:784533 Cmo04g01140 Cmo-Chr4:5821060 9.67E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11118 PF03195 LOB 2.10E-40 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00170 - - mcha:111006433 248.054