Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00170 | ATGCCTGAATGTCAAGAGAAAGGTAAAGAATTGCAGGAGGTTGATGAGATAAAGAGGGAGGTGGTTGAAGGGTTTTATCCATTAATGGGAAGAAGGCAGATATTGAGTCAAGCTGGGGCGCTGAATACCATAACGCCATGTGCGGCCTGTAAGCTATTAAGAAGAAGGTGCGCTCAAGAATGCCCATTTTCTCCATATTTCTCTCCGCATGAACCCCACAAGTTTGCTTCGGTTCATAAGGTTTTTGGTGCCAGCAACGTGGCTAAGATGCTCATGGAAGTGCCGGAGAGTCAAAGAGCGGACGCCGCAAACAGCCTGGTGTATGAAGCCAATCTGAGGCTGAGGGATCCAGTGTACGGCTGCATGGGCGCCATTTCTGCTCTCCAACACCAACTTCAAACCTTACAAGCTGACCTCAACGCTATAAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATCATCCCTTCTCCTTCCTCCTCTTCCTCTTCCCACATCGCTTTCATTTCCGCTACCGGGCTCGTATCCACCACCGCAACCCCGCCTACTGCCCCGCCAACTCCGCCGCCTTCTCAGCCACCTCCGCTCTCTCTTCCCCCGCCTCTTCCTCCCTCCTCCTCCTCCTCCATCTTTTCTCCGCCCATCAGCACCACCACTGCCCCTCAACTAATTAACCCTATCTCAACCCAACATATTCCTTACTTTGGTTAA | 714 | 50.7 | MPECQEKGKELQEVDEIKREVVEGFYPLMGRRQILSQAGALNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQADLNAIRTEILKYKYREAIIPSPSSSSSSHIAFISATGLVSTTATPPTAPPTPPPSQPPPLSLPPPLPPSSSSSIFSPPISTTTAPQLINPISTQHIPYFG | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 784533 | 786311 | - | CmoCh15G001700.1 | Cmo15g00170 | 397678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00170 | 237 | ProSiteProfiles | LOB domain profile. | 45 | 146 | IPR004883 | - | |
Cmo15g00170 | 237 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 29 | 237 | - | - | |
Cmo15g00170 | 237 | MobiDBLite | consensus disorder prediction | 210 | 224 | - | - | |
Cmo15g00170 | 237 | MobiDBLite | consensus disorder prediction | 178 | 224 | - | - | |
Cmo15g00170 | 237 | PANTHER | BNAA03G19070D PROTEIN | 29 | 237 | - | - | |
Cmo15g00170 | 237 | MobiDBLite | consensus disorder prediction | 182 | 209 | - | - | |
Cmo15g00170 | 237 | Pfam | Lateral organ boundaries (LOB) domain | 46 | 142 | IPR004883 | - | |
Cmo15g00170 | 237 | Coils | Coil | 125 | 145 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g01140 | Cmo15g00170 | CCT | |
Cmo04g01140 | Cmo15g00170 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00110 | Cmo-Chr4:579883 | Cmo15g00170 | Cmo-Chr15:784533 | 4.68E-65 | dispersed | |
Cmo15g00170 | Cmo-Chr15:784533 | Cmo20g01156 | Cmo-Chr20:11332397 | 1.90E-46 | dispersed | |
Cmo15g00170 | Cmo-Chr15:784533 | Cmo04g01140 | Cmo-Chr4:5821060 | 9.67E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11118 | PF03195 | LOB | 2.10E-40 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00170 | - | - | mcha:111006433 | 248.054 |