Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00218 ATGAAGAGAACTGAGGCTACTGCTTCTTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTCTGATGGGTATAAAAGCTTCACTTCAAGATCCCCATGGCGTGCTTGAGAATTGGGATGGAGACTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCCCCTGACAGCCTTGTCATTGGCCTAGGGACTCCAAGTCAGAACCTGTCTGGGACTCTTTCTTCAAGCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATTACGGGCCCAATCCCCCCAGAGCTTGAGAGGCTCTCAAAGCTCCAAACACTTGATCTATCAAGCAATTTCTTCACAGGGAAAATTCCTTCTTCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTGTAGCTAACATGACACAGCTTGTGTTTCTCGATGTGTCTTATAATAATATCAGTGGCCCTCTCCCCAGATTTCCCAGCAAAACTTTCAACATTGTTGGAAACCCTCTGATCTGTGCAACTGGGTCCGAGGTCGGTTGCCACGGTTCAACTCTAATGCCCATGTCCATGAACTTGAACAGTACACAAACTGGTTTACCTGCTGTGAGATTGAAAAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGCGAAGACGAAGCAATCGCCCGACGTTTTTCGATGTAAAAGGTAAATTGATTGGAGCATTGTACCGGTTCCAATTTAGACAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAGGATGGCAATGCGAGTAGAGGTGATATCCAGTTTCAGACTGAAGTCGAGATGATCAGCCTAGCCGTGCACCGTCATCTCCTCCGACTGTACGGGTTTTGCAACACACCAACCGAAAGGATTCTTGTTTACCCGTATATGTCTAATGGAAGCGTTGCATCACGTCTCAAAGGAAAACCAGTATTAGACTGGGGAACAAGGAAGAGAATTGCTATAGGAGCTTCAAGGGGATTGTTATACCTCCATGAACAATGTGACCCAAAGATCATACATAGAGACGTTAAGGCTGCAAACATATTGCTCGACGACTACTGCGAGGCTGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTCGACCACCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGTCATATAGCTCCTGAGTATCTCTCGACTGGGCAGTCATCCGAGAAAACAGACGTTTTTGGATTCGGAATTCTACTCCTTGAACTGATCACAGGGCAGAAAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGAATGGGTGAAGAAGATTCACCAGGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAGCTAGAGGAGATGGTTCAAGTGGCTCTGTTGTGTACACAATACCAACCAGGGCACAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGTCTTGCTGTCAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCTCATGATTTCTCTTCATCTGACAGATACTCTGATCTCACAGATGACTCATCCTTGTTGGTCCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1860 45.05 MKRTEATASCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPDSLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPELERLSKLQTLDLSSNFFTGKIPSSLGHLRSLQYLRLNNNSLSGVIPMSVANMTQLVFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEVGCHGSTLMPMSMNLNSTQTGLPAVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNRPTFFDVKGKLIGALYRFQFRQLQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGDIQFQTEVEMISLAVHRHLLRLYGFCNTPTERILVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGASRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALEFGKAANQKGGILEWVKKIHQEKKLEVLVDKDLKANYDRVELEEMVQVALLCTQYQPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 619
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 1057861 1063333 + CmoCh15G002180.1 Cmo15g00218 397726
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00218 619 Gene3D Phosphorylase Kinase; domain 1 275 375 - -
Cmo15g00218 619 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cmo15g00218 619 Pfam Protein kinase domain 300 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00218 619 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Cmo15g00218 619 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 7 619 - -
Cmo15g00218 619 SMART serkin_6 299 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00218 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 619 - -
Cmo15g00218 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Cmo15g00218 619 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515
Cmo15g00218 619 ProSiteProfiles Protein kinase domain profile. 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00218 619 SUPERFAMILY L domain-like 33 205 - -
Cmo15g00218 619 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Cmo15g00218 619 Gene3D Transferase(Phosphotransferase) domain 1 376 588 - -
Cmo15g00218 619 SUPERFAMILY Protein kinase-like (PK-like) 283 595 IPR011009 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo04g02959 Cmo15g00218 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00476 Cmo-Chr10:2124257 Cmo15g00218 Cmo-Chr15:1057861 0 dispersed
Cmo11g00435 Cmo-Chr11:2127616 Cmo15g00218 Cmo-Chr15:1057861 0 dispersed
Cmo15g00218 Cmo-Chr15:1057861 Cmo18g01090 Cmo-Chr18:11413289 0 wgd
Cmo15g00218 Cmo-Chr15:1057861 Cmo04g02959 Cmo-Chr4:20940568 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74899 PF00069 Pkinase 1.40E-44 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00218 - - cpep:111808464 1198.34