Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00232 ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACCGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCCAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACAACTTGA 684 42.98 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGATPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1153897 1156335 + CmoCh15G002320.1 Cmo15g00232 397740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00232 227 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Cmo15g00232 227 MobiDBLite consensus disorder prediction 103 133 - -
Cmo15g00232 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
Cmo15g00232 227 MobiDBLite consensus disorder prediction 103 123 - -
Cmo15g00232 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Cmo15g00232 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cmo15g00232 227 SUPERFAMILY RING/U-box 171 223 - -
Cmo15g00232 227 SMART ring_2 177 217 IPR001841 -
Cmo15g00232 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02944 Cmo15g00232 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01472 Cmo-Chr2:8638743 Cmo15g00232 Cmo-Chr15:1153897 9.36E-29 dispersed
Cmo15g00232 Cmo-Chr15:1153897 Cmo15g01303 Cmo-Chr15:8944516 6.78E-27 dispersed
Cmo15g00232 Cmo-Chr15:1153897 Cmo04g02944 Cmo-Chr4:20846871 2.26E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00232 - - csv:101207736 446.817