Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00232 | ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTCGAAGACTATGTCAATCCAAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGGTTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACACCTATGAGTTCTACAGCATCAACCGATAACTGTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGACCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCCAGGCGAGAGAAGGGGTCAAGCCATTTACAAGAGGAGTCGGAGCCTTTAAGAGGTGATGTGGATACAGATTCAGATTCTTTGGGCTCATCTGGCAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAATTCTTGGCAAGTCATCTCTAAAGTTCCCATCAACTAAATCTACCACTGATGTTGGGTATGCTTATACATCCTCTGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCCGAGAATCCCAAGATAGTGACGAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTTATGGCGTTCGATGAAACAACTTGA | 684 | 42.98 | MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLVFRRGEVHSVSSSIQGATPMSSTASTDNCLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLQEESEPLRGDVDTDSDSLGSSGKWNGSACLEESKEILGKSSLKFPSTKSTTDVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 227 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 1153897 | 1156335 | + | CmoCh15G002320.1 | Cmo15g00232 | 397740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00232 | 227 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 226 | - | - | |
Cmo15g00232 | 227 | MobiDBLite | consensus disorder prediction | 103 | 133 | - | - | |
Cmo15g00232 | 227 | Pfam | RING-H2 zinc finger domain | 174 | 217 | IPR024766 | GO:0008270 | |
Cmo15g00232 | 227 | MobiDBLite | consensus disorder prediction | 103 | 123 | - | - | |
Cmo15g00232 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 154 | 225 | IPR013083 | - | |
Cmo15g00232 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
Cmo15g00232 | 227 | SUPERFAMILY | RING/U-box | 171 | 223 | - | - | |
Cmo15g00232 | 227 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
Cmo15g00232 | 227 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 226 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02944 | Cmo15g00232 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01472 | Cmo-Chr2:8638743 | Cmo15g00232 | Cmo-Chr15:1153897 | 9.36E-29 | dispersed | |
Cmo15g00232 | Cmo-Chr15:1153897 | Cmo15g01303 | Cmo-Chr15:8944516 | 6.78E-27 | dispersed | |
Cmo15g00232 | Cmo-Chr15:1153897 | Cmo04g02944 | Cmo-Chr4:20846871 | 2.26E-145 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00232 | - | - | csv:101207736 | 446.817 |