Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00236 ATGGATGCGAATAGTTCGCGATTTCAGTCGTTTGGTCAAACTGAGATTAACTGGGACAAGCTTGATAAAGCAAAATTTTATGGCATCGGAGCTGGTCTCTTTACCGGGATTACAGTCGCACTGTACCCTGTTTCCGTTGTAAAAACAAGGATGCAGGTTGCTGTAAAGGATTCTGCAGAGAAAAACGCGGCGTCTGTCGTTAAAGGCTTACTTAAGAATGATGGGGTTCCTGGTCTTTACAGAGGGTTTGGCACAGTAATCACTGGTGCAATTCCTGCAAGGATTATCTTTCTTACCGCTTTGGAGACGACCAAAGTGGGAGCCTTTAAAATGGTTGAGCCATTTAAATTATCTGAACCCTCACAGGCTGCTATAGCAAACGGGTTAGCTGGCATGACTGCATCCCTTTTCTCTCAAGCTGTTTTTGTTCCAATTGATGTGATTAGTCAAAAGCTAATGGTTCAAGGATACTCGGGTAATGCAAGATATAATGGGGGCTTAGATGTTGCTCGTAAACTGATAAAGTCCGATGGCATCCGGGGATTGTATAAAGGTTTTGGGTTATCTGTTATAACCTACTCTCCATCTAGTGCTGTATGGTGGGCAAGTTATGGTGCAAGTCAACGCATCATCTGGAGGTTCTTAGGCCAAAACTCAGCTTCTGAGAGCTTTGCTCCAAGCCATACCCAACTTATTTCAGTGCAAGCTGGGGGTGGAATAATCGCAGGTGCAACAGCTTCCTGCATTACAACACCATTGGACACCATAAAGACTCGCTTACAGGTGATGGGCGATAAAGGGAAGACAGCAAGACAAATTGTTGAAAGCTTAATCGCAGAGGATGGATGGAAAGGTTTCTACAGGGGGCTGGGTCCTCGGTTCTTCAGCATGTCAGCCTGGGGAACCTCCATGATATTGGCTTACGAGTACTTAAAGCGCTTGTGTTCAAATGATGAACAGAGTTGA 966 44.93 MDANSSRFQSFGQTEINWDKLDKAKFYGIGAGLFTGITVALYPVSVVKTRMQVAVKDSAEKNAASVVKGLLKNDGVPGLYRGFGTVITGAIPARIIFLTALETTKVGAFKMVEPFKLSEPSQAAIANGLAGMTASLFSQAVFVPIDVISQKLMVQGYSGNARYNGGLDVARKLIKSDGIRGLYKGFGLSVITYSPSSAVWWASYGASQRIIWRFLGQNSASESFAPSHTQLISVQAGGGIIAGATASCITTPLDTIKTRLQVMGDKGKTARQIVESLIAEDGWKGFYRGLGPRFFSMSAWGTSMILAYEYLKRLCSNDEQS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1176543 1180513 + CmoCh15G002360.1 Cmo15g00236 397744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00236 321 Pfam Mitochondrial carrier protein 238 317 IPR018108 -
Cmo15g00236 321 Pfam Mitochondrial carrier protein 30 106 IPR018108 -
Cmo15g00236 321 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Cmo15g00236 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 314 IPR018108 -
Cmo15g00236 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 318 - -
Cmo15g00236 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 19 107 IPR018108 -
Cmo15g00236 321 PRINTS Mitochondrial carrier protein signature 39 53 IPR002067 GO:0055085
Cmo15g00236 321 PRINTS Mitochondrial carrier protein signature 239 261 IPR002067 GO:0055085
Cmo15g00236 321 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cmo15g00236 321 SUPERFAMILY Mitochondrial carrier 19 311 IPR023395 -
Cmo15g00236 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 318 - -
Cmo15g00236 321 Gene3D Mitochondrial carrier domain 26 321 IPR023395 -
Cmo15g00236 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 210 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02937 Cmo15g00236 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01603 Cmo-Chr14:12683302 Cmo15g00236 Cmo-Chr15:1176543 1.33E-106 dispersed
Cmo15g00236 Cmo-Chr15:1176543 Cmo17g00679 Cmo-Chr17:6942765 4.19E-82 dispersed
Cmo15g00236 Cmo-Chr15:1176543 Cmo04g02937 Cmo-Chr4:20803476 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00236 K15121 - csv:101206140 596.275