Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00258 ATGTTCCCAATCCTCAAATCCCCAAATTGGGAGCACTTTTGTAAGAAACAGAGAAATTCAGAGACTGAGGAGGAGCTGAACCAAAAAAGAAACACAAGCACAGCTTCATCAATGGCTAAGAACAAGGACGACCACTCTGCCAGACCTCCACCCCGCCCGACTATCACTCTGCCACCACGTCCTTCCATGGAGGCCTTTTTTGCTGGTGGACCCACTGGGCTTAGCCCTGGCCCTATGACTCTCGTCTCTAGTTTCTTCGCCGACGCTGCCGTTGACTCGCCGTCTTTCTCCCAGCTTCTCGCCGGAGCCATGGCCTCTCCGATAGCTATGGGGTTTTTGGGAACTGGGTCTACGCCCAATTCGGAATCGGAATTTGGGTTGAAGCAATCGAAGCCGATGAATTTAGTCGTGGCTCGGTCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGCCCTTCTGGGTTGCTTAATTCGCCGGGGTTTTATCCTCCCCAGAGTCCGTTCGGGATGTCACACCAGCAGGCATTGGCTCAGGTGACTGCTCAAGCGGCATTGGCGCACTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCCTCAATACCAGTTTCTACCGAACCGTTGATACGCGATCCATCGTTTACTCTTGATGAAGCATCTCTGCAGTTAATATTACCCTCCACGTCCGATACGAAAAGTCTCGTTCCAGAATCGACAGAAGTCTCTCATCCTGATAGAAAGTATCAACCTCCTCCTCCACATGCTGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACTCATTTGAATTGCCCCGTAAAGAAGAAGATCGAACGCTCACCTGATGGACAAATTACTGAAATTATTTACAAAGGCCAGCACAACCATGAACGTCCTCCAGCCAACAAACGCGCTCGAGATAATAGCGAACCGACTGGATGTACAAATTCTTCGACGAAGCTTGAATGTGGTTTGCAAAATCAAGCGGGAATTTTGAACAAGTCGAGTGAAAATGTGCAAGTAGGATCTAGTGACAGTGAAGAACAAGGTGATACAGAGATAACGGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGAAGCAGGGACATCTGGGGTTGCCTTGTCTCACAAGACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGATGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAATCCGAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTCGAGAGGTCTTCAACGGACTCGAAAGCTGTCGTAACTACGTACGAAGGGAAACATAACCATGATGTTCCAGCAGCTAGAAACAGCAGCCACCACACAGTCAACAATACCGTGCACCAGATCAAACCACATAAAGTTGTAGCTCAGAAACATCCATTACTCAAAGAGTTGGAATTTGGAAGTAATGAGCAGAGACGTGCCGTTTTGCGGCTGAAAGAAGAGAAAATCACCGTGTAA 1608 47.64 MFPILKSPNWEHFCKKQRNSETEEELNQKRNTSTASSMAKNKDDHSARPPPRPTITLPPRPSMEAFFAGGPTGLSPGPMTLVSSFFADAAVDSPSFSQLLAGAMASPIAMGFLGTGSTPNSESEFGLKQSKPMNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSIPVSTEPLIRDPSFTLDEASLQLILPSTSDTKSLVPESTEVSHPDRKYQPPPPHAASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHERPPANKRARDNSEPTGCTNSSTKLECGLQNQAGILNKSSENVQVGSSDSEEQGDTEITDDRDEDEPNPKRQNIEAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVHQIKPHKVVAQKHPLLKELEFGSNEQRRAVLRLKEEKITV 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1248796 1251791 + CmoCh15G002580.1 Cmo15g00258 397766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00258 535 MobiDBLite consensus disorder prediction 1 62 - -
Cmo15g00258 535 MobiDBLite consensus disorder prediction 357 400 - -
Cmo15g00258 535 Pfam WRKY DNA -binding domain 262 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 Pfam WRKY DNA -binding domain 422 478 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 Gene3D WRKY domain 254 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 Gene3D WRKY domain 406 482 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 PANTHER WRKY PROTEIN 47 534 - -
Cmo15g00258 535 ProSiteProfiles WRKY domain profile. 416 481 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 MobiDBLite consensus disorder prediction 312 326 - -
Cmo15g00258 535 SUPERFAMILY WRKY DNA-binding domain 259 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 ProSiteProfiles WRKY domain profile. 256 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 MobiDBLite consensus disorder prediction 227 265 - -
Cmo15g00258 535 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 47 534 IPR044810 GO:0003700
Cmo15g00258 535 MobiDBLite consensus disorder prediction 311 341 - -
Cmo15g00258 535 SMART WRKY_cls 261 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 SMART WRKY_cls 421 480 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 SUPERFAMILY WRKY DNA-binding domain 413 481 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g00258 535 MobiDBLite consensus disorder prediction 11 28 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02919 Cmo15g00258 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00029 Cmo-Chr14:153073 Cmo15g00258 Cmo-Chr15:1248796 3.42E-82 dispersed
Cmo15g00258 Cmo-Chr15:1248796 Cmo16g01037 Cmo-Chr16:7226008 5.48E-13 dispersed
Cmo15g00258 Cmo-Chr15:1248796 Cmo18g01145 Cmo-Chr18:11701929 9.19E-131 wgd
Cmo15g00258 Cmo-Chr15:1248796 Cmo04g02919 Cmo-Chr4:20697081 0 wgd
Cmo15g00258 Cmo-Chr15:1248796 Cmo04g01766 Cmo-Chr4:8911214 9.36E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11123 PF03106 WRKY 3.50E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00258 - - cmos:111445028 1067.37