Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00274 ATGGCTTCATTGGGGATCATAATCCTCTTAGTGGGTGTTTCTTGGACGGTGTCGTGTGTTAATGGCGATTATGGGGGTTGGATCAACGCGCACGCCACTTTCTATGGTGGCAGTGATGCATCTGGGACAATGGGGGGGGCTTGTGGGTATGGAAATTTATACAGCCAAGGGTATGGAACCAACACTGCAGCGCTAAGCACGGCGCTGTTTGACAATGGCCTTAGCTGTGGCGCTTGCTTTGAGCTGCGCTGTGTCAACGACCCACAGTGGTGTATTCCAGGCACTATTGTTGTCACTGCCACTAACTTCTGCCCTCCTGGCGGCTGGTGCGACCCTCCCAACCACCATTTCGACCTGTCTCAGCCTATCTTCCAACACATTGCTCAATATCGTGCCGGAATTGTCCCCGTGGCTTACCGCAGGTACTCCAGTGGTGTAACTCGTAAAGATTACTTCAGAATTTTAATTATAAACGTGAATTTTGCAGGGTGCAGAAGAAGTGGGGGGATAAGATTTACAATCAACGGCCATTCATATTTCAATTTGGTACTAGTGACCAACGTGGGGGGTGCTGGAGATATACATTCAGTAGCGATTAAGGGCTCGAGGACCCGATGGCAACCCATGTCAAGAAATTGGGGCCAAAATTGGCAGTCCAACTCTTATCTGAACGGACAGAGTCTCTCCTTTCTGGTAACAGCCAGCGACGGGCGACAAGTGCTGTCCTACAACGTGGCTCCCTCCGGCTGGTCCTTCGGACAGACATACGTGGGCGCACAGTTCCGCTATTAA 792 51.01 MASLGIIILLVGVSWTVSCVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRYSSGVTRKDYFRILIINVNFAGCRRSGGIRFTINGHSYFNLVLVTNVGGAGDIHSVAIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGAQFRY 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1315251 1316281 + CmoCh15G002740.1 Cmo15g00274 397782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00274 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Cmo15g00274 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664
Cmo15g00274 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664
Cmo15g00274 263 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cmo15g00274 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664
Cmo15g00274 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Cmo15g00274 263 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cmo15g00274 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Cmo15g00274 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Cmo15g00274 263 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cmo15g00274 263 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cmo15g00274 263 Pfam Lytic transglycolase 62 139 IPR009009 -
Cmo15g00274 263 PANTHER EXPANSIN-A15 162 262 IPR002963 GO:0009664
Cmo15g00274 263 Gene3D - 169 261 IPR036749 -
Cmo15g00274 263 SUPERFAMILY PHL pollen allergen 166 257 IPR036749 -
Cmo15g00274 263 PANTHER EXPANSIN-A15 11 144 IPR002963 GO:0009664
Cmo15g00274 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 141 IPR007112 -
Cmo15g00274 263 PANTHER EXPANSIN-A5 162 262 - -
Cmo15g00274 263 Gene3D - 13 143 IPR036908 -
Cmo15g00274 263 PANTHER EXPANSIN-A5 11 144 - -
Cmo15g00274 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Cmo15g00274 263 SUPERFAMILY Barwin-like endoglucanases 26 187 IPR036908 -
Cmo15g00274 263 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00274 Cmo-Chr15:1315251 Cmo04g01132 Cmo-Chr4:5778098 2.79E-122 dispersed
Cmo01g00834 Cmo-Chr1:4452811 Cmo15g00274 Cmo-Chr15:1315251 3.16E-113 wgd
Cmo15g00274 Cmo-Chr15:1315251 Cmo18g01159 Cmo-Chr18:11792230 4.51E-117 wgd
Cmo15g00274 Cmo-Chr15:1315251 Cmo04g01748 Cmo-Chr4:8826880 1.11E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00274 K20628 - csv:101220358 458.373