Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00285 ATGTCTTCTGCTATCTCTTTGTTTCCATCTCTCTCTCCTGTCTGCAAGTTTCATGACCATTCAAGGAAGACCCACCACTCCAAAACAGCTAACAAAGAAAACCCATATTCTATAATTCCTCTAGACATTAAAATCAGTAAGAGAAATCTATTGACATCCACTGGTCTCACTCTTCTAGCAGACGGTTTTCTCGATGACTCTGTTTCGGCAAGAGCAGAGCCAGAGAGTCCTATTGAATCCACTTCCAGTCGTTTGTCGTACTCAAGATTCTTGCAATATTTGGATGAAGGGGGAGTGAAGAAGGTTGATATTCTTGAGAACGGTACGGTCGCCATAGCTGAGATTTATAATCCTGTGTTGGACAAGATTCAGAGGGTTAAGATTCAGCTGCCTGGGCTGCCAAAAGAGTTGATAAGGAAGATGGAGCTTAAGAATGTGGATTTTGCAGCTTATCCTATGCAGGTCAATTGGGGGCTTGCAATTCTTGACTTGTTGGGAAATTTGGCCTTTCCATTGTTGTTGCTTGGTTCCTTGCTGCTTCGATCATCGTCTTCAAACTCTCCTGGAGGACCCAACTTGCCATTTGGACTTGGAAGGAGTAAGGCCAAATTCCAGATGGAACCCAACACAGGAGTGACATTTGATGATGTAGCTGGGATTGATGAAGCGAAGCAAGATTTCCAAGAAATTGTGGAGTTTTTGAAGATCCCCGAGAAGTTTTCAGCTGTTGGAGCAAGAATACCAAAAGGGGTTCTCTTAATTGGGCCGCCAGGAACAGGGAAGACCTTGTTGGCTAAAGCCATTGCAGGGGAAGCTGGAGTTCCTTTCTTCTCTCTCTCTGGTTCTGAGTTCATAGAGATGTTCGTTGGGGTTGGGGCTTCAAGAGTGAGAGATTTATTCAACAAAGCAAAAGCCAATTCCCCGTGCTTAGTTTTCATTGATGAGATAGATGCTGTTGGGAGACAGAGAGGCACAGGCATTGGTGGAGGAAACGATGAAAGAGAGCAGACACTGAATCAATTGCTCACTGAAATGGATGGTTTTACTGGTAATAGTGGTGTGATCGTCATCGCCGCCACCAACCGCCCTGAAATTCTCGACTCTGCTTTGCGCCGGCCAGGGAGGTTCGATAGACAAGTTACAGTGGGATTACCTGACGTGAGAGGAAGAGAAGAAATCCTGAAGGTTCACAGCAAAAACAAGAAACTGGACAGCAACATATCACTCAGCATCGTTGCAATGAGGACGCCAGGCTTCAGCGGCGCCGATTTGGCTAACCTAATGAACGAAGCTGCAATTCTAGCAGGAAGAAGAGGCAAAGAACAAATCACAGTGCGAGAAATCGACGATTCCATCGACAGAATTGTGGCCGGCATGGAAGGAACCAAAATGACAGATGGGAAGAGCAAAATTGTCGTGGCTTACCATGAAATTGGGCACGCCGTGTGCTCGAGCTTGACGGAGGGTCATGATCGAGTGCAGAAAGTGACACTGATTCCGAGAGGGCAAGCGAGAGGACTGACATGGTTCTTGCCCGGAGAAGACCCATCTCTGGTTTCGAAGAAGGAATTATTTGCTCGAATTGTTGGTGGGCTTGGTGGCAGAGCGGCGGAGGATGTGATCTTTGGGGAGCCGGAGATCACCACCGGTGCTGCCGGAGATCTGCTGCAGGTCACCCAAATCGCTAGACAGATGGTGACGGTATTTGGGATGTCAGAGATAGGGCCATGGGCATTGATAGATCCAGCAACACAGAGCAGTGATGTGGTGATGAGAATGCTGGCTCGAAACTCCATGTCGGAGAAGTTAGCCGAAGACATAGATTCATCCATACGACATATAATAGAAAGGGCATACGAAATTGCAAAAGCCCACATTAGAAACAATCGAGAAGCCATTCATAAATTGGTGGATGTTTTGTTAGAGAAAGAAACCATCACCGGAGATGAATTTAGAACTATTCTCTCCGAAGAGCTTTGTGCTTTTCAAAGAGCCATGGATTTAGCCCCACCTCCCATCACTACTACAACCACGGCTAATAGCACCAAATCTCCCGACCCAGACTCCGACACTCCCACACGCTTCCCGCCGTCGTCTTCGGCCAAGTCGCTGCCTTTCACCAACGGCCTTCTCAAGCGCCACAACCACGCCCCTCAACCCACCCTCCTTGTTTCTTACAAAGAATGTCTCAAAAACCACGCGGCCAGTTTAGGAGCTCACGCGTTGGACGGATGTGGGGAATTTATGCCCTCCCCATCTGCCTCTTCCATTGATCCCACTTCGCTTAACTGCGCCGCATGCGGCTGCCACCGGAATTTCCACCGCCGTGACCCGGAGGATCCGATCTCTACTTTACCCATCAATACAGCAACCACTCATGTCATCGAGTATCAACCCCACCATCGTCATCACCCACCACCGCCCGGGACGCGGAGCCCGAATTCAGCATCTCCGCCGCCGATCTCGTCGTCGTACTACCCATCAGCGCCGCACATGTTACTAGCGCTTTCCGCCGGGTTGTCGGCTCATCCACCGGAAATCGGACGCGCGAAAAATTTAAACGCTCGGAAACGATTCAGGACGAAATTCAGCAACGAACAGAAGGAAAAAATGCTCCATTTTGCAGAACAAGTGGGATGGAAAATGCAAAAGCGAGACGAGGATTTGGTCCGAAATTTTTGCAATCAAGTTGGAGTCGAAAGAGGGGTTCTTAAAGTATGGATGCATAACAACAAGAACACCATGGGCAAAAAAACTGATTCCAATGACACCACCCCTACTACACCCACCACAACCGCCACCGCCGCCACCGCCGTCGTCAATATCAACAACAACGACGATGAAGACGAACCAGACGGCGGCTTCCATATGCATATTGGATCAAATGGGTCATCTTCTTCATCTTGA 2907 48.54 MSSAISLFPSLSPVCKFHDHSRKTHHSKTANKENPYSIIPLDIKISKRNLLTSTGLTLLADGFLDDSVSARAEPESPIESTSSRLSYSRFLQYLDEGGVKKVDILENGTVAIAEIYNPVLDKIQRVKIQLPGLPKELIRKMELKNVDFAAYPMQVNWGLAILDLLGNLAFPLLLLGSLLLRSSSSNSPGGPNLPFGLGRSKAKFQMEPNTGVTFDDVAGIDEAKQDFQEIVEFLKIPEKFSAVGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRDLFNKAKANSPCLVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFTGNSGVIVIAATNRPEILDSALRRPGRFDRQVTVGLPDVRGREEILKVHSKNKKLDSNISLSIVAMRTPGFSGADLANLMNEAAILAGRRGKEQITVREIDDSIDRIVAGMEGTKMTDGKSKIVVAYHEIGHAVCSSLTEGHDRVQKVTLIPRGQARGLTWFLPGEDPSLVSKKELFARIVGGLGGRAAEDVIFGEPEITTGAAGDLLQVTQIARQMVTVFGMSEIGPWALIDPATQSSDVVMRMLARNSMSEKLAEDIDSSIRHIIERAYEIAKAHIRNNREAIHKLVDVLLEKETITGDEFRTILSEELCAFQRAMDLAPPPITTTTTANSTKSPDPDSDTPTRFPPSSSAKSLPFTNGLLKRHNHAPQPTLLVSYKECLKNHAASLGAHALDGCGEFMPSPSASSIDPTSLNCAACGCHRNFHRRDPEDPISTLPINTATTHVIEYQPHHRHHPPPPGTRSPNSASPPPISSSYYPSAPHMLLALSAGLSAHPPEIGRAKNLNARKRFRTKFSNEQKEKMLHFAEQVGWKMQKRDEDLVRNFCNQVGVERGVLKVWMHNNKNTMGKKTDSNDTTPTTPTTTATAATAVVNINNNDDEDEPDGGFHMHIGSNGSSSSS 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1345770 1352165 + CmoCh15G002850.1 Cmo15g00285 397793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00285 968 MobiDBLite consensus disorder prediction 670 705 - -
Cmo15g00285 968 Gene3D Peptidase M41 464 661 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cmo15g00285 968 Gene3D - 385 463 - -
Cmo15g00285 968 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 6, CHLOROPLASTIC 3 657 - -
Cmo15g00285 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 454 IPR027417 -
Cmo15g00285 968 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 726 777 IPR006456 -
Cmo15g00285 968 SUPERFAMILY Homeodomain-like 850 917 IPR009057 -
Cmo15g00285 968 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 167 655 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cmo15g00285 968 Gene3D - 846 917 - -
Cmo15g00285 968 SUPERFAMILY FtsH protease domain-like 466 657 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cmo15g00285 968 ProSitePatterns AAA-protein family signature. 354 372 IPR003960 GO:0005524|GO:0016887
Cmo15g00285 968 Pfam ATPase family associated with various cellular activities (AAA) 251 383 IPR003959 GO:0005524|GO:0016887
Cmo15g00285 968 CDD AAA 226 384 - -
Cmo15g00285 968 SMART AAA_5 247 386 IPR003593 -
Cmo15g00285 968 Pfam ZF-HD protein dimerisation region 724 778 IPR006456 -
Cmo15g00285 968 PANTHER METALLOPROTEASE M41 FTSH 3 657 - -
Cmo15g00285 968 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 726 777 IPR006456 -
Cmo15g00285 968 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 856 913 IPR006455 -
Cmo15g00285 968 Pfam AAA+ lid domain 407 448 IPR041569 -
Cmo15g00285 968 MobiDBLite consensus disorder prediction 798 824 - -
Cmo15g00285 968 Pfam Peptidase family M41 464 654 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cmo15g00285 968 Gene3D - 202 383 IPR027417 -
Cmo15g00285 968 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 6 689 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cmo15g00285 968 MobiDBLite consensus disorder prediction 943 968 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01047 Cmo-Chr11:5821076 Cmo15g00285 Cmo-Chr15:1345770 5.87E-83 dispersed
Cmo11g01433 Cmo-Chr11:10090426 Cmo15g00285 Cmo-Chr15:1345770 2.29E-73 dispersed
Cmo11g01987 Cmo-Chr11:13635684 Cmo15g00285 Cmo-Chr15:1345770 0 dispersed
Cmo14g00601 Cmo-Chr14:3042234 Cmo15g00285 Cmo-Chr15:1345770 1.49E-85 dispersed
Cmo15g00285 Cmo-Chr15:1345770 Cmo19g01040 Cmo-Chr19:9087210 0 dispersed
Cmo15g00285 Cmo-Chr15:1345770 Cmo18g01173 Cmo-Chr18:11839574 6.94E-51 wgd
Cmo15g00285 Cmo-Chr15:1345770 Cmo04g02895 Cmo-Chr4:20605577 5.35E-117 wgd
Cmo15g00285 Cmo-Chr15:1345770 Cmo04g01734 Cmo-Chr4:8784011 1.07E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11126 PF01434 Peptidase_M41 2.90E-65 CL0126 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00285 K03798 - csv:101213306 1108.59