Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g00292 | ATGGCGGAACCAGTTGCAGAGCCCAAGGCATTACCCGAACCCGAGAAGAAAAAGGAACACACCCTTCCTTTCTTCCAACTCTTCTCTTTTGCAGACAAATACGACTGCTTTCTTATGATCCTCGGCACTTTCGGCGCCATTGTCCATGGCTCTTCCATGCCCGTTTTCTTCCTCCTCTTCGGCCAAATGGTTAATGGCTTCGGCAAAAACCAATCCGATTTTCACAAAATGACAGCCGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTGTCTCATCCTATGCCGAGATCGCATGTTGGATGTACACAGGGGAGAGGCAAGTGAGCACGTTGAGAAAGAAGTATTTAGAGGCTGTTTTGAAACAAGACGTTGGATTCTTTGACACTGATGCCAGAACAGGGGATGTTGTTTTCAGCGTCTCAACAGACACTCTTCTTGTTCAAGATGCTATCAGTGAGAAGGTAGTTACTTCATTCTGCAAAATCCCCATCTGGGTAGTTGCTATATCATCAATTAAAGCAATATGCGCACCAAGATGGGGTTTTACCGCCATTAACACAGTGAATCTAAACCATGAATCAGATCTTTCCTCGTCTTCTTCTTCTTTTATGAATTGGGTGGGGAACTTCATTCACTATCTCTCGACGTTCTTGGCTGGTTTGGTGGTGGGTTTTGTGTCAGCATGGCGACTAGCACTTCTCAGTATAGCAGTAATTCCAGGAATCGCTTTTGCTGGTGGTTTATATGCTTATACTCTTACTGGACTCACTTCCAAGAGTCGGGAATCCTATGCCAATGCTGGCATAATTGCCGAACAGGCGATTGCTCAAGTTCGAACTGTTTACTCTTATGTTGGGGAAAGCAAAGCCCTGAATTCCTATTCAGATGCGATTCATAACACGTTGAAAATTGGATATAAGGCTGGAATGGCCAAGGGGTTGGGCTTAGGTTGTACCTATGGCATTGCTTGTATGTCTTGGGCACTTGTCTTCTGGTATGCTGGAGTCTTCATCCGAAACGGCCAGAGCGACGGCGGCAAAGCCTTCACTGCTATATTCTCCGCCATCGTTGGTGGCATGAGTTTGGGGCAGTCATTCTCCAATTTGGGCGCATTCAGTAAAGGAAAAGCAGCAGGGTATAAGTTGATGGAGATTATCAAACAGAGGCCTTCGATCATTCAAGACCCATTTGATGGGAAGTGTTTGGGTGAAGTTAAAGGCAATATTGAGTTCAAAGATGTCACCTTTAGCTACCCATCCAGACCGGACGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCTGCCGGGAAGACTGTCGCCGTCGTCGGTGGCAGCGGTTCTGGGAAAAGCACCGTTGTCTCTCTCATTGAAAGATTCTACGATCCCAAACAAGGGCATGTTCTGTTGGACAATGTGGACATTAAGACGCTGCAATTGAAATGGCTGCGTGATCAAATCGGTTTAGTGAATCAGGAACCGGCTCTGTTTGCAACCACCATATACGAAAACATTCTCTACGGCAAACCCGATGCCACGACGGCGGAGGTGGAAGCCGCCGCGGCTGCAGCCAACGCTCATAGCTTCATCACATTGCTGCCCAATGGCTACGACACCCAAGTCGGCGAAAGAGGATTACAACTCTCCGGCGGCCAAAAACAGAGGATTGCCATAGCCAGAGCAATGTTGAAGAACCCCAAAATCCTTCTCCTCGATGAAGCCACCAGCGCCCTCGATGCAGGCTCTGAAAACATTGTTCAAGAAGCTTTAGACCGTTTAATGGTCGGAAGAACAACGGTTGTAGTCGCACATCGATTATCAACCATAAAAAATGTGGACTCAATTGCAGTGATACAACAGGGGCAGGTCGTGGAAACAGGAACCCACGAAGAACTAATCGCCAAATCCGGTGCTTATTCCTCGTTAATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGTCGAACACGATCATCACGGCTGAGCCATTCGTTATCGACAAAATCATTAAGCCTCCGCTCCGGCAGCCTCAGGAATTTGAGCTATTCGTATAGCACCGGCGCCGACGGGAGAATCGAAATGGTCTCAAACGCCGAAACTGACCGGAAAAATCCAGCCCCAGATGGCTATTTCATTCGTCTTCTTAAACTCAACGGCCCCGAATGGCCGTATTTGATAATGGGCGCTGTTGGGTCTATTCTCTCTGGTTTCATCAGTCCAACATTTGCCATTGTGATGAGTAACATGATCGAGGTCTTCTATTACACAAACTCATCCGCCATGGAAAGGAAAATCAAGGAATTCGTATTCATCTACATTGGAATTGGGGTTTACGCAGTGGTGGCATATCTAATTCAGCATTATTTCTTTACAATCATGGGTGAAAATCTCACTACCAGAGTCAGAAGAATGATGCTCGCAGCGATATTGAGGGAAGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCAAGTTTAGTAGCAGCAAGACTGGCCACTGATGCAGCTGATGTTAAATCCGCCATTGCTGAAAGAATATCAGTGATTCTGCAAAACATGACTTCACTCTTCACTTCGTTCATAGTTGCATTCATTGTTGAATGGAGAGTTTCTCTGCTCATCCTTGCAGCCTTCCCTCTGCTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGGGATACTGCAAAGGCTCATGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTGTTTCGCCATGAGCTTCGCGTCCCACAGAAACAGAGCCTCCGCCGGAGCCAAACGGCGGGTGTCCTTTTCGGCATCTCGCAGCTCGCTCTGTATGCCTCTGAAGCTCTGGTTTTATGGTATGGTGTTCATTTGGTCAGCAATGGCGGATCGACATTCTCCAAAGTGATTAAAGTCTTTGTTGTGTTGGTTGTTACTGCCAATTCTGTGGCGGAGACTGTTAGTCTTGCTCCTGAGATCATTAGGGGTGGTGAATCAATTGGTTCTGTTTTCTCGATTCTCGGTCGCCCGACAATGATCGACCCTGATGATCCTGAGGCGGAGGTTGTTGAGATGCTTCGTGGGGAAATTGAGCTTCGACATGTCGATTTCGCGTACCCGTCTCGACCTGATGCCATGGTGTTCAAGGATTTTAATCTTAGGATCAGGGCTGGTAAGAGCCAGGCATTGGTTGGAGCAAGTGGATCAGGGAAGAGTTCTGTGATTGCGTTGATTGAGAGATTCTACGATCCGATCGCCGGGAAAGTTATGATCGACGGGAAGGACATTCGACGTCTGAACTTGCAATCCTTGAGGCTAAAAATTGGGTTGGTACAGCAAGAGCCAGCCCTGTTTGCAGCCAGCATTTTTGACAACATTGCATATGGAAAAGATGGAGCAACCGAGGCAGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTAAGTGGACTGCCTGATGGCTACAAGACACCAGTTGGGGAAAGGGGCGTTCAGCTATCTGGTGGCCAAAAACAACGCATTGCTATTGCCAGGGCAGTTCTCAAGGATCCCACAATCCTCCTCCTCGACGAGGCCACCAGTGCCCTTGACGCTGAGTCCGAGTGTGTGCTGCAAGAGGCTCTCGAAAGGCTCATGAGGGGTCGAACCACAGTAGTCGTGGCACATCGCCTGTCGACAATCAGGGGCGTCGACAGCATCGGCGTGGTCCAAGATGGACGCATTGTTGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGACCCGAGGGAGCTTACTCAAGGCTGTTGCAGCTGCAACACCAACACATATGA | 3909 | 47.94 | MAEPVAEPKALPEPEKKKEHTLPFFQLFSFADKYDCFLMILGTFGAIVHGSSMPVFFLLFGQMVNGFGKNQSDFHKMTAEVSKYALYFVYLGLIVCVSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVVTSFCKIPIWVVAISSIKAICAPRWGFTAINTVNLNHESDLSSSSSSFMNWVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIHNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPSIIQDPFDGKCLGEVKGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPKQGHVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAANAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTIKNVDSIAVIQQGQVVETGTHEELIAKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFIRLLKLNGPEWPYLIMGAVGSILSGFISPTFAIVMSNMIEVFYYTNSSAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILREEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQKQSLRRSQTAGVLFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILGRPTMIDPDDPEAEVVEMLRGEIELRHVDFAYPSRPDAMVFKDFNLRIRAGKSQALVGASGSGKSSVIALIERFYDPIAGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELLSRPEGAYSRLLQLQHQHI | 1302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 1372725 | 1379019 | + | CmoCh15G002920.1 | Cmo15g00292 | 397800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g00292 | 1302 | SMART | AAA_5 | 1087 | 1259 | IPR003593 | - | |
| Cmo15g00292 | 1302 | SMART | AAA_5 | 442 | 634 | IPR003593 | - | |
| Cmo15g00292 | 1302 | CDD | ABC_MTABC3_MDL1_MDL2 | 415 | 652 | - | - | |
| Cmo15g00292 | 1302 | Gene3D | ABC transporter type 1, transmembrane domain | 12 | 189 | IPR036640 | GO:0005524|GO:0016021 | |
| Cmo15g00292 | 1302 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 39 | 388 | - | - | |
| Cmo15g00292 | 1302 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 415 | 651 | IPR003439 | GO:0005524 | |
| Cmo15g00292 | 1302 | ProSitePatterns | ABC transporters family signature. | 1199 | 1213 | IPR017871 | GO:0005524 | |
| Cmo15g00292 | 1302 | Gene3D | - | 1050 | 1302 | IPR027417 | - | |
| Cmo15g00292 | 1302 | Pfam | ABC transporter transmembrane region | 207 | 365 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Cmo15g00292 | 1302 | Pfam | ABC transporter transmembrane region | 737 | 1009 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Cmo15g00292 | 1302 | Pfam | ABC transporter transmembrane region | 39 | 172 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Cmo15g00292 | 1302 | Gene3D | - | 405 | 653 | IPR027417 | - | |
| Cmo15g00292 | 1302 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 409 | 652 | IPR027417 | - | |
| Cmo15g00292 | 1302 | SUPERFAMILY | ABC transporter transmembrane region | 200 | 401 | IPR036640 | GO:0005524|GO:0016021 | |
| Cmo15g00292 | 1302 | CDD | ABC_MTABC3_MDL1_MDL2 | 1060 | 1298 | - | - | |
| Cmo15g00292 | 1302 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 211 | 1300 | IPR039421 | - | |
| Cmo15g00292 | 1302 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 15 | 162 | IPR039421 | - | |
| Cmo15g00292 | 1302 | PANTHER | ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED | 211 | 1300 | - | - | |
| Cmo15g00292 | 1302 | PANTHER | ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED | 15 | 162 | - | - | |
| Cmo15g00292 | 1302 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 40 | 380 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Cmo15g00292 | 1302 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1062 | 1296 | IPR003439 | GO:0005524 | |
| Cmo15g00292 | 1302 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 727 | 1043 | - | - | |
| Cmo15g00292 | 1302 | SUPERFAMILY | ABC transporter transmembrane region | 725 | 1045 | IPR036640 | GO:0005524|GO:0016021 | |
| Cmo15g00292 | 1302 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 176 | IPR036640 | GO:0005524|GO:0016021 | |
| Cmo15g00292 | 1302 | Pfam | ABC transporter | 1079 | 1227 | IPR003439 | GO:0005524 | |
| Cmo15g00292 | 1302 | Gene3D | ABC transporter type 1, transmembrane domain | 193 | 1029 | IPR036640 | GO:0005524|GO:0016021 | |
| Cmo15g00292 | 1302 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 738 | 1025 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
| Cmo15g00292 | 1302 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1050 | 1298 | IPR027417 | - | |
| Cmo15g00292 | 1302 | ProSitePatterns | ABC transporters family signature. | 554 | 568 | IPR017871 | GO:0005524 | |
| Cmo15g00292 | 1302 | Pfam | ABC transporter | 435 | 582 | IPR003439 | GO:0005524 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00387 | Cmo-Chr6:1880723 | Cmo15g00292 | Cmo-Chr15:1372725 | 2.19E-99 | dispersed | |
| Cmo14g00215 | Cmo-Chr14:979115 | Cmo15g00292 | Cmo-Chr15:1372725 | 2.07E-97 | dispersed | |
| Cmo15g00292 | Cmo-Chr15:1372725 | Cmo19g00237 | Cmo-Chr19:1666009 | 7.20E-121 | dispersed | |
| Cmo20g00543 | Cmo-Chr20:2638405 | Cmo15g00292 | Cmo-Chr15:1372725 | 1.12E-06 | dispersed | |
| Cmo15g00292 | Cmo-Chr15:1372725 | Cmo04g02890 | Cmo-Chr4:20570027 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g00292 | K05658 | - | csv:101212585 | 2200.63 |