Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00296 ATGGCTTCCCCTCACCATTCCCATAGCTTCCTCTTCCAATCCCGTCCCGCCGATCACCACGAATACCTTCCCTCAGCTTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTCCACGATGGGGTCGTCCCGGTGATGATGAAGAGATCGATGTCGTTTTCAGGCATCGAAAATGGATGCGAGGAAATGAACGGCGACGAGGGGCTATCGGACGATGGATTGGCGTTGGGAGAGAAGAAGAAGCGCCTTAATTTAGAGCAAGTGAAGGCTTTGGAGAAGAGCTTTGAGCTGGGGAATAAGCTTGAGCCTGAGAGAAAGATTCAACTGGCCAAAGCCTTGGGGTTGCAGCCAAGACAGGTTGCTATTTGGTTCCAGAACAGAAGAGCCAGATGGAAGACCAAGCAGCTGGAAAGAGATTATGAGGTCTTGAAGAAACACTTTGAATCTCTTAAGGCTGACAATGATGTCCTCCAAGCTCAAAACACCAAACTCCATGCAGAGTTATTAGCGTTAAAAACCAAGGACTCCGGTGAGGTGGCGGGCGGCGGGGCCACCATGAACCTAAAGAAAGAAAACGAACGGTGTTGGAGCAGCGACAACAGTTGTGACATCAACCTGGACATCTCAAAGACACAAGCAGCAATAAACGGCGGGGAAGGTGGAAGAGCATGTTGTGAACCAGGGATCAAAGACCTATTCCCATCGGCGGCGTTCGGATCGGGTGCCATAACGCAGCTGATTCAACGCGGGTCATCCAGGTCAACGGTTGACCATCCTCAAGTAATTCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGTATTGAAGAACAACAACAAAGTGCAGCAGCAGCAGCAGCAGCAGCTGGGCAAAACGTCGAAGAAGTTGGTATCGATTTAACGCAGTTCCCTCCCGATCGGATTAGAAACTTTTCTATAATCGCTCATGTGGATCACGGCAAGTTTACACTGGCTGATCGACTTTTGGAGCTCACTGGTACTATTAAGCGAGGCCATGGTCGGCCTCTATACCTCGATAAGTTGCAGGTCTATTGTCAAATTAACAAGGAAAACTATCGAACGTCTGGCCATGTTGATTTCAGCTATGAAGTGTCGAGATCCTTAGCAGCTTGTCAGGGTCCTCTTTTGATTGTGGATGCGGCCGAAGGTGTTCAAGCCCAAACAGTGGCTAATTTTTATCTTGCTTTTGAATCTAATTTAGCAATTTTACCGGTTATTAACAAAATTGACCAGCCAACTGCTGATCCTGATCGTGTTAAAGCTCAACTGAAATCAATGTTCTGCACATGCTATGTCGACATCTGCCAAAACAGGGCAAGGTCTTGA 1350 48.07 MASPHHSHSFLFQSRPADHHEYLPSASFNAIPSCPPHLYFHDGVVPVMMKRSMSFSGIENGCEEMNGDEGLSDDGLALGEKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQVAIWFQNRRARWKTKQLERDYEVLKKHFESLKADNDVLQAQNTKLHAELLALKTKDSGEVAGGGATMNLKKENERCWSSDNSCDINLDISKTQAAINGGEGGRACCEPGIKDLFPSAAFGSGAITQLIQRGSSRSTVDHPQVIQEESFSQMFNGIEEQQQSAAAAAAAAGQNVEEVGIDLTQFPPDRIRNFSIIAHVDHGKFTLADRLLELTGTIKRGHGRPLYLDKLQVYCQINKENYRTSGHVDFSYEVSRSLAACQGPLLIVDAAEGVQAQTVANFYLAFESNLAILPVINKIDQPTADPDRVKAQLKSMFCTCYVDICQNRARS 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1395440 1399314 + CmoCh15G002960.1 Cmo15g00296 397804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00296 449 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT7 1 284 - -
Cmo15g00296 449 Gene3D - 77 148 - -
Cmo15g00296 449 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Cmo15g00296 449 Pfam Elongation factor Tu GTP binding domain 308 340 IPR000795 GO:0003924|GO:0005525
Cmo15g00296 449 Pfam Elongation factor Tu GTP binding domain 362 435 IPR000795 GO:0003924|GO:0005525
Cmo15g00296 449 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 284 IPR045224 GO:0003700
Cmo15g00296 449 SMART HOX_1 79 140 IPR001356 GO:0003677
Cmo15g00296 449 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Cmo15g00296 449 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Cmo15g00296 449 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355|GO:0043565
Cmo15g00296 449 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Cmo15g00296 449 SUPERFAMILY Homeodomain-like 79 138 IPR009057 -
Cmo15g00296 449 Coils Coil 135 169 - -
Cmo15g00296 449 CDD homeodomain 81 137 IPR001356 GO:0003677
Cmo15g00296 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 307 449 IPR000795 GO:0003924|GO:0005525
Cmo15g00296 449 Gene3D - 299 447 IPR027417 -
Cmo15g00296 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 440 IPR027417 -
Cmo15g00296 449 ProSiteProfiles 'Homeobox' domain profile. 80 136 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02884 Cmo15g00296 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02884 Cmo-Chr4:20528681 Cmo15g00296 Cmo-Chr15:1395440 9.02E-180 dispersed
Cmo15g00296 Cmo-Chr15:1395440 Cmo16g00786 Cmo-Chr16:3982870 1.39E-37 dispersed
Cmo13g00956 Cmo-Chr13:8306478 Cmo15g00296 Cmo-Chr15:1395440 1.38E-36 wgd
Cmo15g00296 Cmo-Chr15:1395440 Cmo18g01188 Cmo-Chr18:11928384 1.58E-72 wgd
Cmo15g00296 Cmo-Chr15:1395440 Cmo04g02883 Cmo-Chr4:20518974 2.37E-68 wgd
Cmo15g00296 Cmo-Chr15:1395440 Cmo04g01722 Cmo-Chr4:8724214 6.09E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11129 PF00009 GTP_EFTU 1.10E-17 CL0023 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00296 K09338 - csv:101212093 504.212