Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00299 ATGAGGTATAAATTTTACTGGTTGGTAGCAGCTATATGGATTACATCTATTGTATACTTCCAAGAAGCCGTGACAGAACATCATCATCCGAGGACTCTTGGTTCTACTCAGGTAAGATATCTGGGTTGTGAGGCATTGAAATCTGTTTTTAAGAGATTTGGGGATATGGGTTTGGCACCAAATGACTCCAAAGTCGAGACATGGATTGAGGGCAAGTCAAGAATAGCTACCGAGAAGAAGAAGAAGAAGGAGAATGAGCCGGAGGAGGAGACCGGATGTTGGGTTAAGTTGAAGTTCATAGGGAGTTGCATTCCTTCTAGATCAAAGGTTGATACTTCTCTGAGTGGATCAAAGGTCGATAGCTTCATCAGCGCCACCAGCACCCATTGCGATAGTAAATCTAGAGTTGACGAGAAAAGAGATAGCCTGGTTACTACATTGGGGTTATCAGCAACAACTGATAATGCTGAAAGTAGTTCCTCCACGCCCAAGTTTAGTGCTGAGCTGAAGGTTGCTTCTAGGCTTCGTAAGTTCACTTTCAACGAGCTTAAGTTAGCCACAAGAAATTTTCGACCTGAGAGCCTTCTGGGCGAGGGAGGTTTTGGCTGTGTTTTCAAAGGATGGATTGAGGAGAATGGGACTGCTCCTGCTAAACCTGGAACAGGGCTTACTGTTGCAGTCAAGACTCTTAACCATGATGGTCTACAAGGTCACAAGGAGTGGATGGCTGAAGTTAACTTCCTTGGTGACCTCAACCATTCTAATCTTGTGAGATTGATTGGTTGCTGCATTGAAGATGATCAAAGGTTATTAGTTTATGAGTTCATGCCTCGTGGGAGTTTGGAGAACCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCTTGGTCCATGAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTGATATATCGTGACTTTAAAACGTCTAATATTCTATTAGATGCGGATTACAACGCTAAACTCTCAGATTTTGGACTTGCAAAAGATGGTCCTGAGGGTGATAAAACTCATGTTTCAACTCGGGTTATGGGAACATATGGTTATGCAGCTCCAGAATATGTGATGACTGGCCATTTGACGTCAAAAAGCGATGTCTATAGCTTTGGAGTTGTCTTGCTTGAAATGCTAACGGGTCGAAGATCGATGGATAAGAATAGACCGAATGGGGAGCACAACCTTGTTGAATGGTCTAGACCCCTGCTTGGAGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGCCTCGAATGTCACTTTTCGATCAAAGGTGCACAAAAAGCTGCAGAGCTTGCTGCTCACTGCCTTAGTAGAGATCCTAAAGCCAGACCTGTGATGAGTGAAGTTGTTGAAACTTTAAAACCTTTGCCAAACCTCAAGGACATGGCGAGTTCTTCCTATTACTTCCAAACCATGCAAGCTGACCGTGCCAGGGCCAACCCAAATGCTAAAGGTGTCGTCCGCACGCAGTCGATGTTTGTGGCAAGGAATGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCAGGCTTCTCCGTATAATTATCCTCATCACTCACCAAAACCTGACAGGAAACAACCTTAA 1644 44.53 MRYKFYWLVAAIWITSIVYFQEAVTEHHHPRTLGSTQVRYLGCEALKSVFKRFGDMGLAPNDSKVETWIEGKSRIATEKKKKKENEPEEETGCWVKLKFIGSCIPSRSKVDTSLSGSKVDSFISATSTHCDSKSRVDEKRDSLVTTLGLSATTDNAESSSSTPKFSAELKVASRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLNHSNLVRLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSMRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWSRPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTMQADRARANPNAKGVVRTQSMFVARNGQHIRSLSSPNGPQASPYNYPHHSPKPDRKQP 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1402587 1408928 - CmoCh15G002990.1 Cmo15g00299 397807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00299 547 CDD STKc_IRAK 196 474 - -
Cmo15g00299 547 MobiDBLite consensus disorder prediction 519 533 - -
Cmo15g00299 547 Gene3D Transferase(Phosphotransferase) domain 1 276 494 - -
Cmo15g00299 547 PANTHER OS01G0588500 PROTEIN-RELATED 123 538 - -
Cmo15g00299 547 SUPERFAMILY Protein kinase-like (PK-like) 167 471 IPR011009 -
Cmo15g00299 547 Pfam Protein tyrosine and serine/threonine kinase 194 471 IPR001245 GO:0004672|GO:0006468
Cmo15g00299 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Cmo15g00299 547 Gene3D Phosphorylase Kinase; domain 1 164 275 - -
Cmo15g00299 547 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 123 538 - -
Cmo15g00299 547 ProSitePatterns Protein kinases ATP-binding region signature. 196 228 IPR017441 GO:0005524
Cmo15g00299 547 ProSiteProfiles Protein kinase domain profile. 190 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00299 547 MobiDBLite consensus disorder prediction 519 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00306 Cmo-Chr3:4223787 Cmo15g00299 Cmo-Chr15:1402587 6.31E-64 dispersed
Cmo07g01265 Cmo-Chr7:6911687 Cmo15g00299 Cmo-Chr15:1402587 1.77E-67 dispersed
Cmo12g01221 Cmo-Chr12:10901190 Cmo15g00299 Cmo-Chr15:1402587 9.98E-176 dispersed
Cmo15g00299 Cmo-Chr15:1402587 Cmo02g00799 Cmo-Chr2:4928915 1.29E-161 dispersed
Cmo15g00299 Cmo-Chr15:1402587 Cmo18g01199 Cmo-Chr18:11991198 0 wgd
Cmo15g00299 Cmo-Chr15:1402587 Cmo04g02882 Cmo-Chr4:20514478 0 wgd
Cmo15g00299 Cmo-Chr15:1402587 Cmo04g01710 Cmo-Chr4:8664886 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74903 PF07714 PK_Tyr_Ser-Thr 6.00E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00299 - - csv:101211851 938.717