Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00326 ATGAAGTTCATGATCCATAGACACGTCAAACACAACTGGGTTTTGGAGAAGAATTCTCCACCGGTTGCAGTTTCAGAGATAACCAGTAGTCCTCGACGGAAATGGCGGATCTTCAATCGGTCTTCTTCTTCCCCATTTCCTTCGAAACCTCCCCAATCGAAGGAAATACCTAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGATCCTGTAATTGTCTCCTCTGGTCACACTTTCGAAGCCGCCTGTGTTCAGGTTTGTAAAGATTTAGGGTTGAAGCCGACTCTGTTAGACGGTTCCAACCCGGATTTCTCCTCTGTTATCCCAAATCTGGCTCTCAAATCCACTATTCTCAATTGGTGTAAGAATTCCTCTTCTGAATCCCCCAAACCCCTCGATTTCTCCTCCGCTGAAAAGCTCGTTCGTCAATTCATGGCGGCCCACACCAAAAGCGATGAGGAATTGATTCAAGGGATTGCAGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACCGAAGTCACTCGTCGGACCTCTCATTTTCACTCGAGCTCCGATGAATCTGTAGGCGCCGCCGTTCAAACTTTGCCTCTTCCTCTCGCGACAAGGCCGAGTTGTTGTTCTTCGTCTTCTTCCTCTGACATCGAGGTAATCAGTGATCTGAACTTGCCCGAGGAAGAAGAGATCATCGCGAAGCTGAAAAGCTCTCAGGTTATTGAGATTGAAGAGGCTGTGACTGCGCTGAGAAAAATCACTAGAACTCGAGAGGATTCTAGGGTTCATCTCTGTTCTCCTCTGATTCTCTCTTCTCTGCGATCTCTCATCGTCTCGAGGTACACTGGCGTTCAGGTGAATTCAGTTGCAGCGCTTGTAAATCTGTCTTTAGAGAATTTGAACAAGGTTAAGATTGTAAGGTCGGGGATTCTCCCCAATTTGATCGATGTTCTGAAAGGGGGTTCACCGGAGGTTCAAGAACATGCCGCCGGCGCCATTTTCAGCTTAGCTCTCGAAGACGACAACAAAACCGCGATCGGCGTTTTGGGTGCTCTGCCGCCATTGATACGGCTGTTGGTATCCGAATCAGAGCAAACACGGCACGACTCGGCTCTTGCTCTTTATCACTTGTCGCACGTTCAGAGCAACCGTTCGAAGCTTGTGAAACTTGGGTCGGTGCCGGTCTTTCTCGGGATGGTGAAATCCGGCCATATGGCCGGCCGTATTTTACTGATATTGTGTAATTTAGCTGCTTGTTTTGAGGGCCGGGCGGCGTTGTTGGACTCCGGTGCAGTGGAGTGCTTGGTGGGGATGTTGAGGGAGAACGAGCTGGACACTGAGTCGACTCGGGAGAGCTGTGTGGCTGTCCTGTTCGGACTGAGTTACGGCGGTTTGAGGTTTAAGGGTCTGGCAAAAACCGCCGGAGCAATGGAGGTGTTCATGGCGGTAGAGAAAAATGGAAGCGAGAGATCAAAAGAAAAGGTGAAGAGAATCATGGAGTATATGAAAGCCAGAGATGAGGAAGCTGAGGATGTGAATTGGGAGGAGCTACTCGACTCGGGTTGTTTCGGCAGCCGTACTCGGTGTCGAATCGGTGCCGGAATGGACAGATCCACCGCGAACTCGTCGGAGTTCTGA 1638 49.94 MKFMIHRHVKHNWVLEKNSPPVAVSEITSSPRRKWRIFNRSSSSPFPSKPPQSKEIPKELLCPISGSLMADPVIVSSGHTFEAACVQVCKDLGLKPTLLDGSNPDFSSVIPNLALKSTILNWCKNSSSESPKPLDFSSAEKLVRQFMAAHTKSDEELIQGIAENPVVRFNHAATEVTRRTSHFHSSSDESVGAAVQTLPLPLATRPSCCSSSSSSDIEVISDLNLPEEEEIIAKLKSSQVIEIEEAVTALRKITRTREDSRVHLCSPLILSSLRSLIVSRYTGVQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALEDDNKTAIGVLGALPPLIRLLVSESEQTRHDSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDTESTRESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEYMKARDEEAEDVNWEELLDSGCFGSRTRCRIGAGMDRSTANSSEF 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1512571 1514846 + CmoCh15G003260.1 Cmo15g00326 397834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00326 545 SUPERFAMILY ARM repeat 231 489 IPR016024 -
Cmo15g00326 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 346 IPR000225 GO:0005515
Cmo15g00326 545 Pfam U-box domain 56 126 IPR003613 GO:0004842|GO:0016567
Cmo15g00326 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515
Cmo15g00326 545 CDD RING-Ubox 61 104 - -
Cmo15g00326 545 Pfam Armadillo/beta-catenin-like repeat 340 378 IPR000225 GO:0005515
Cmo15g00326 545 Pfam Armadillo/beta-catenin-like repeat 301 337 IPR000225 GO:0005515
Cmo15g00326 545 SMART arm_5 419 462 IPR000225 GO:0005515
Cmo15g00326 545 SMART arm_5 298 338 IPR000225 GO:0005515
Cmo15g00326 545 SMART arm_5 339 379 IPR000225 GO:0005515
Cmo15g00326 545 SMART arm_5 257 297 IPR000225 GO:0005515
Cmo15g00326 545 Gene3D - 226 501 IPR011989 -
Cmo15g00326 545 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Cmo15g00326 545 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 32 534 - -
Cmo15g00326 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 128 IPR013083 -
Cmo15g00326 545 PANTHER U BOX DOMAIN-CONTAINING 32 534 - -
Cmo15g00326 545 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Cmo15g00326 545 SUPERFAMILY RING/U-box 50 128 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02856 Cmo15g00326 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00160 Cmo-Chr10:725771 Cmo15g00326 Cmo-Chr15:1512571 3.66E-170 dispersed
Cmo11g00121 Cmo-Chr11:626277 Cmo15g00326 Cmo-Chr15:1512571 7.30E-171 dispersed
Cmo15g00326 Cmo-Chr15:1512571 Cmo04g01075 Cmo-Chr4:5408500 2.74E-36 dispersed
Cmo13g00931 Cmo-Chr13:8185126 Cmo15g00326 Cmo-Chr15:1512571 8.30E-155 wgd
Cmo15g00326 Cmo-Chr15:1512571 Cmo04g02856 Cmo-Chr4:20359053 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00326 - - cmax:111489531 1016.14