Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00330 ATGGCTCCGAGCTCTGTTGTTGTTACAATTGAGAAGCATAGCAGCTTCCCTTTAGTGGAAATCAATGGCTCTGATTCCTTGTTGCTTCCGGAGAAGCAGAAGGCTGCGAGTCCCAAGCAGCTCACATGGGTTCTTCTTCTCAAAGCCCATAGAGCTCTGTTTTTCTTCTCGTGGATGGCGATGACTATGAAGGCGGTGTTTGCTTCTGTTAAGAAACGCATTGCTCATGCGGATATTAACGAAGAGGATTCCAAAAGCCGTAAGTTATATAGATTCATTAAGGCTTTTCTTGCGATTTCAATTACGGGTTTGATCGTCGAAGTTGTTGCTCATTTCAAGAAGTGGAATCTGCGAATGATTCAGCCATTGGAGCTCGAAGTTCATGGGATTATTCAATGGTTTTACGTCTCGTGGCTTTCGTTTCGTGTTGATTACATTGCGCCAATGGTTCTCATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGATCGCCTTGTTCTCTGCTTCGGCTGCTTTTGGATCAAATACAAGAAAATCAAACCCACTATTCAAGATAACGCTTATGATTTGGAAGATGCTTCGAATTTTCCTTTGGTTCTTGTTCAAATCCCAATGTGTAATGAGAGAGAGGTCTATGCGCAATCGATTGCTGCTGCTTGTGAGCTTGACTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCAGACGATGGAAATCTTCAGCGTTTGATCAAAGAAGAAGTTCTATCATGGAATGAAAAGGGTGTTAATATTGTTTATCGACATAGATTGATCCGAACTGGGTACAAAGCTGGGAATCTTCAGTCCGCCATGGCTTGTGATTATGTTAAAGATTATGAGTTCATAGCTATTTTAGATGCTGATTTCCAGCCCAACCCAGATTTTCTTAAGCTAACAATCCCTCATTTCAAGGGAAATCCTGAGGTGGGGCTTGTCCAAGCTCGTTGGGCGTTTGTTAACAAAGAAGAAAACTTGCTTACCAGACTCCAAAACATCAACTTGTGCTTCCACTTTGAAGTGGAGCAGCAAGTTAATGGGGTTTTTCTCAACTTCTTTGGATTCAATGGAACAGCAGGCGTTTGGAGAGCGAAAGCGCTCGAGGAATCCGGTGGCTGGCTCGAGCGCACGACGGTGGAGGACATGGATATCGCTGTTCGAGCACACTTGATGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCTATGCAGCTCTTCAGATTATGCCTTCCTTCCATCATAACTTCAAAGATATCAATATGGAAGAAGACGAACTTGATATTCCTGTTCTTCCTCTTAAGAAAACTCATACTTCCCTTTTACTCATTCACTTTGTTCTGCATAATTCTTCCATTAACAATGTTCATTCCAGAAGCAGAGTTGCCTCTGTGGGTAATCTGCTACATCCCAGTGTTCATGTCCTTACTAAACATTCTCCCATCCCCAAAATCCTTCCCTTTCTTGATCCCATATCTCTTGTTTGAGAACACCATGTCAGTAACAAAGTTCAACGCCATGATTTCGGGGCTATTCCAGCTCGGAAGCTCATACGAATGGGTCGTGACAAAGAAAACAGGACGATCATCAGAATCCGACTTCCTAGCATTAGCCGAACGAGAGTCGAAAACGTGGAACGAGGAGAAGATTCTAAGGAGACATTCAGAGTCAGGGCTGGAGTTGTTGAGTAAATTGAACCAACAAGACAAGCAAATGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTAGCTCTTGCCTTTCTGCTGCTCACTGCAGCAGCCAGAAGCTTGCTGTCAGCTCATGGAGTTCACTTCTACTTCTTGCTGTTCCAAGGGCTGTCGTTCCTGGTGGTGGGTTTGGACTTGATTGGCGAGCAAATGAACTGA 1998 43.44 MAPSSVVVTIEKHSSFPLVEINGSDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWMAMTMKAVFASVKKRIAHADINEEDSKSRKLYRFIKAFLAISITGLIVEVVAHFKKWNLRMIQPLELEVHGIIQWFYVSWLSFRVDYIAPMVLMLSKFCIVLFLIQSLDRLVLCFGCFWIKYKKIKPTIQDNAYDLEDASNFPLVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLQSAMACDYVKDYEFIAILDADFQPNPDFLKLTIPHFKGNPEVGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLMGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMISGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKTWNEEKILRRHSESGLELLSKLNQQDKQMASKKKRNKVYRKELALAFLLLTAAARSLLSAHGVHFYFLLFQGLSFLVVGLDLIGEQMN 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1534075 1536839 + CmoCh15G003300.1 Cmo15g00330 397838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00330 665 Coils Coil 599 619 - -
Cmo15g00330 665 SUPERFAMILY Nucleotide-diphospho-sugar transferases 203 503 IPR029044 -
Cmo15g00330 665 Pfam Glycosyl transferase family group 2 295 500 IPR001173 -
Cmo15g00330 665 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 4 1 664 - -
Cmo15g00330 665 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 420 IPR029044 -
Cmo15g00330 665 PANTHER - 1 664 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00330 K20887 CSLC4; xyloglucan glycosyltransferase 4 [EC:2.4.1.-] - csv:101208151 1224.15
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02854 Cmo15g00330 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01628 Cmo-Chr1:12376518 Cmo15g00330 Cmo-Chr15:1534075 0 dispersed
Cmo09g00524 Cmo-Chr9:2448784 Cmo15g00330 Cmo-Chr15:1534075 0 dispersed
Cmo12g00551 Cmo-Chr12:3402529 Cmo15g00330 Cmo-Chr15:1534075 0 dispersed
Cmo15g00330 Cmo-Chr15:1534075 Cmo17g01263 Cmo-Chr17:9943064 0 dispersed
Cmo20g00575 Cmo-Chr20:2813782 Cmo15g00330 Cmo-Chr15:1534075 7.33E-129 dispersed
Cmo15g00330 Cmo-Chr15:1534075 Cmo04g02854 Cmo-Chr4:20351480 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1401 . . . . . . . . . . . . . . Sed11g1949 . Cpe13g00918 Bhi06g00485 Tan11g0591 Cmetu09g0739 . Hepe02g3123 . Lcy10g1947 . . . . . . . . . Cone2ag0150 Cone16ag0905 Lsi02g01542 Csa05g02920 . . . . . . . . . . . Cmo04g02854 Cmo15g00330 Cma04g02723 Cma15g00318 Car04g02628 Car15g00304 . Cpe01g02362 . . . . . . . Cla09g01834 . . Cco09g2084 . . . . . Chy09g00318 Cme09g00337
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00330 Cmo_Chr15 FPKM 70.934105 89.942833 9.781518 7.950232 12.309586 11.660407 10.834472 7.830188 6.556769 7.416706