Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00332 ATGGCGGGAAGTGGAACATACCTGATGGAAGCGGCTCTACCGTTTCCGGCGATGATCTCCATGGAGTGTATCAACGTCGGACTCAACACTCTTTTCAAAGCCGCCACCGCCTCCGGCATGAGCCACCACGTCTTCGTCGTCTATTCTTACTCCCTCGCCGCGCTTCTCCTCCTCCCTTCTCCCTTCATTTCTCGCAGATCCAGGCGTCTACCACCTCTGAGTTTCTCTGTACTTTCCAAGATCGCGCTTCTCGGACTCATCGGTTCTTCTTCGCAGATTATGGGATACACGGGAATCAACTACAGTTCTCCGACGCTTGCTTCCGCTATCAGCAACCTTGTTCCTGCTTTCACTTTCATCCTCGCCGTCATTTTCAGGATGGAGAAAGTGGTATTGAGAAGACATAGCAGTCAAGCCAAAGTGATGGGCACCATAATATCCATATCAGGTGCCTTTGTGGTCACTCTTTACAAGGGCCCTAGGATTATGCTCTCTTCAGCGCCCACGGCTCTTTCACTTCATCATCCGTTACCCTCTTCCCACTCTAATTGGGTCATTGGCAGCCTTCTCTTGACTGCTGAATACATCTTGGTTCCCCTTTGGTACATTGTTCAGACAAGAATTATGAAGGAATACCCAGACGAGGCAACAGTGATCTTCTTCTACAACTTAACAGTGGCCTTCATAGCTGCCATTGTTGGGGTGGTTTTGGAGACAGATCCAAGCGCTTGGATCTTGAAGCAGCATACAGCATTGGCCTCTGTTTTATGCTCTGGACTTTTTGGATCATGCTTGAATAATACAGTTCATACATGGGCACTCCGGTTGAAAGGGCCAGTGTTCGTAGCGATGTTTAAGCCGTTGTCGATCGTCGTTGCGATCGTAATGGGTGTTCTATTTCTCGGCGATTCACTATATCTTGGAAGTGTTGTTGGAGCATCCATAATATCCATAGGGTTTTATACTGTGATGTGGGGGAAAGCAAAGGAAGAAAGGGGCGTTGGAGAAGAAAAAGAAGAAGGCCATACCCATAATCTTAGTGGCAACAAGGAATCACATGAAGATCAGAGAGTACCTCTTCTTGGAAGCTACAACACACACAGACACAGTGCAGACAATGCGATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCGCTTGAAAATCAAGTTCTCAAGGCTTGGAATGTACTGGCTCGCCGTCAAATTAGTACCCAACTCATTGAAATTGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTTGAACCCACAAAAGTGGAATCCATCGTTAAAAATTTCGCTTCTAAACAGGAACCCTTGCCATTGTCCTTATCGTCAATTGGTAGCCTTCCCAGTGACAACAACGTTCTATTTCTTGGTCCAGCACCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAATCGGGGAGGAATATCGTCCGGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAGGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTTTCCGGAACGGCATATAGGAGCCAAATGGAGGATGATACGGCATCCTCCATAGCTTCATACTTTGCAGGCCAGAAATTGGATGGTATCGATAATATTCACCTCGTCGACAGAGTCAATGTCAAATCCACTTTCAAGTAG 1722 47.5 MAGSGTYLMEAALPFPAMISMECINVGLNTLFKAATASGMSHHVFVVYSYSLAALLLLPSPFISRRSRRLPPLSFSVLSKIALLGLIGSSSQIMGYTGINYSSPTLASAISNLVPAFTFILAVIFRMEKVVLRRHSSQAKVMGTIISISGAFVVTLYKGPRIMLSSAPTALSLHHPLPSSHSNWVIGSLLLTAEYILVPLWYIVQTRIMKEYPDEATVIFFYNLTVAFIAAIVGVVLETDPSAWILKQHTALASVLCSGLFGSCLNNTVHTWALRLKGPVFVAMFKPLSIVVAIVMGVLFLGDSLYLGSVVGASIISIGFYTVMWGKAKEERGVGEEKEEGHTHNLSGNKESHEDQRVPLLGSYNTHRHSADNAMSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLSSIGSLPSDNNVLFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEYRPGSWIPHCSVAQEVPRARMAEAFCVLRDLKLPVSGTAYRSQMEDDTASSIASYFAGQKLDGIDNIHLVDRVNVKSTFK 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1540074 1547139 - CmoCh15G003320.1 Cmo15g00332 397840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00332 573 Pfam EamA-like transporter family 197 324 IPR000620 GO:0016020|GO:0016021
Cmo15g00332 573 Pfam EamA-like transporter family 26 155 IPR000620 GO:0016020|GO:0016021
Cmo15g00332 573 MobiDBLite consensus disorder prediction 332 352 - -
Cmo15g00332 573 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 158 - -
Cmo15g00332 573 PANTHER WAT1-RELATED PROTEIN 11 341 IPR030184 GO:0016021|GO:0022857
Cmo15g00332 573 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 329 - -
Cmo15g00332 573 PANTHER WAT1-RELATED PROTEIN 11 341 - -
Cmo15g00332 573 SUPERFAMILY LigT-like 379 525 IPR009097 -
Cmo15g00332 573 Gene3D Cyclic phosphodiesterase 380 547 - -
Cmo15g00332 573 Pfam 2'-5' RNA ligase superfamily 415 529 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02853 Cmo15g00332 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01705 Cmo-Chr11:12105277 Cmo15g00332 Cmo-Chr15:1540074 2.29E-99 dispersed
Cmo15g00332 Cmo-Chr15:1540074 Cmo04g02746 Cmo-Chr4:19879893 2.54E-59 dispersed
Cmo15g00332 Cmo-Chr15:1540074 Cmo15g00335 Cmo-Chr15:1548106 8.16E-82 proximal
Cmo04g02853 Cmo-Chr4:20349402 Cmo15g00332 Cmo-Chr15:1540074 1.69E-105 transposed
Cmo11g01704 Cmo-Chr11:12093252 Cmo15g00332 Cmo-Chr15:1540074 2.08E-66 wgd
Cmo15g00332 Cmo-Chr15:1540074 Cmo04g02852 Cmo-Chr4:20345051 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00332 - - csv:101208880 581.637