Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00340 ATGATGTCGGACGGATTGATCTTCAACCGATCTCCAGGTCACGCCAACATGCTGTTTTTTGGGAGTGGCGATTCCATTCTTCGAGGATCATGTTTCACGAAGGGGATGGAGGAAAATTCGAAGCGACCCTTTTTCAGCTCTCCGGATGACCTGTTCGATGATGACTACTACGATGACCAGCCGCCTGAGAAGAAGCGCCGGCTAACTCAAGAGCAGGTGCATCTGCTGGAGATTAGCTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTAGCAAAGAAGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGATGGAAGACAAAGCAGCTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTTGTTCTAGCTACGACTTTATGGCCAAGGAGAATGAAAGACTCAAAGCCGAGATGCTGAAAGCTCAACATTTTTTGATATTTGCTTGCTTGGCTGTGTTTGATCTGACATATCTTCTGCACATAAATTTAAGTAGATTCTTTGATGGTGGTCCATGGACTGTTTATCTTAGTTTCTTAAGACGACTTGTTAATACTACAAGTTTCATCATCACATTTGGTCTAACGACGTCTTTTAACCTCGTGGTTCTATTATCGAATTGGACTTTTTGGGCTCATCGAGTTCTGAACTCAAATTTCTGGGCGTCAAGAGAAGATATGGATTCTTTTCCCAGATATGATGGAAAAGGACTGGTGAAATTAGTTAAAGAGGGACTTGGTATTGTTACTGAGCCAGGGGTAGCTTCTTTAACTGAGAAACTTCAAGCTAAAGAAGTGGTTGAATCATCGTTTCAAGCTAAGAAATCCGAGCCAATTCTGGAAGATCAACTCCTTGTTTCTGTTGTGCAACACAATATGAAGATTGATGACCATCATAGTTGCAGGAGCAATGGAAGCGCTGTGCTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCATACCTCCTGAGCAATGACTATGATGGCTGTGTGTTGCCAGTTTTTGGAGTGAACTCGGAGGAGGAGGATGTGAGTGATGACGGTCAGGGCTACTTCTCGGATGTTTATACAGCAGCCGATCAGCAGACTCACGAGGCAGAGCCATTGACCTGGTGGGACTGGTCGTTGTAA 1179 45.04 MMSDGLIFNRSPGHANMLFFGSGDSILRGSCFTKGMEENSKRPFFSSPDDLFDDDYYDDQPPEKKRRLTQEQVHLLEISFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFCSSYDFMAKENERLKAEMLKAQHFLIFACLAVFDLTYLLHINLSRFFDGGPWTVYLSFLRRLVNTTSFIITFGLTTSFNLVVLLSNWTFWAHRVLNSNFWASREDMDSFPRYDGKGLVKLVKEGLGIVTEPGVASLTEKLQAKEVVESSFQAKKSEPILEDQLLVSVVQHNMKIDDHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDGCVLPVFGVNSEEEDVSDDGQGYFSDVYTAADQQTHEAEPLTWWDWSL 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1583354 1585594 - CmoCh15G003400.1 Cmo15g00340 397848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00340 392 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 375 - -
Cmo15g00340 392 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Cmo15g00340 392 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Cmo15g00340 392 SMART HOX_1 62 123 IPR001356 GO:0003677
Cmo15g00340 392 CDD homeodomain 64 120 IPR001356 GO:0003677
Cmo15g00340 392 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Cmo15g00340 392 Gene3D - 58 125 - -
Cmo15g00340 392 Pfam Homeobox associated leucine zipper 119 154 IPR003106 GO:0006355|GO:0043565
Cmo15g00340 392 SUPERFAMILY Homeodomain-like 47 121 IPR009057 -
Cmo15g00340 392 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Cmo15g00340 392 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Cmo15g00340 392 MobiDBLite consensus disorder prediction 42 62 - -
Cmo15g00340 392 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 375 IPR045224 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01698 Cmo15g00340 CCT
Cmo14g00654 Cmo15g00340 CCT
Cmo04g02845 Cmo15g00340 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00340 Cmo-Chr15:1583354 Cmo18g00098 Cmo-Chr18:676252 1.40E-35 dispersed
Cmo11g01698 Cmo-Chr11:12022787 Cmo15g00340 Cmo-Chr15:1583354 3.42E-17 wgd
Cmo14g00654 Cmo-Chr14:3312300 Cmo15g00340 Cmo-Chr15:1583354 3.38E-15 wgd
Cmo15g00340 Cmo-Chr15:1583354 Cmo04g02845 Cmo-Chr4:20319544 5.65E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11130 PF00046 Homeodomain 7.90E-17 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00340 K09338 - csv:101210106 244.202