Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00343 ATGGATCATTCAGCTGAGACATCTAGGCACAAGTGCGCTGCTTGCTTCAGGCAGTTCAACAAGATTGAGCATTTGGTTGATCATATGAGGACCTCTTTCCACTCACCTCATGAACCCACTTGTGCCGTTTGCAAGAAACACTGTCGTTCTCTTGATTCTCTTAGAGAACATCTCATTGGGCCGCTGCCGAAGCAAGAATGCAAAAACGTCTTCGACATGCGAGGATGCAAGTTTTGCTTGGCCATCCTTGACAGTTCATACTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCGTGTGTTAATTCTGGGCTCCTTGCTCGTTTGGCCAACTTGGGAATTCGCGATGGTTCAACCGCCATCGACGGTGGAAGAACTCGAGGCTCCGGTCCCGTGGCGTTAGCTTGCAAATATGTAGGTGGCGGAGATGGGTCGCTGGATGTCTGTGCCAAGGTCTGCCTTATTGATGAGAGTGAAAATGTCATCTTCTATAGCTATGTCAAGCCCATAATTCCCGTTACAAATTATAGGTATGAAATGACGGGCATTCGTCCCGAACACCTTCGAGATGCAATGCCATTGAAGCAAGTTCAAAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTGTGTGGAGGACGATCTCAAACGTCTACAAATCGGATATCCATCCATCATGATAAGGGACATAGCAAATTATCCGCCATTGATGAAGACAAGCAAGCTATGCAATTCACTCAAATTTGAGATTCAAAATGGAGTACAAGATCCTTATGAAGAATGTGTGGGTGGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGCATCATCCAATGGCTTCTGACCCACAAAACAAAAACAACTTCGCAGCTTGGAGGGAAAGTGAGCTTGAGAGGATGAGCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTACTGTTGGTGCATGGATTTGAGGATTTGA 1008 45.24 MDHSAETSRHKCAACFRQFNKIEHLVDHMRTSFHSPHEPTCAVCKKHCRSLDSLREHLIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDGSTAIDGGRTRGSGPVALACKYVGGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNYRYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMIRDIANYPPLMKTSKLCNSLKFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIEHHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1597157 1599498 - CmoCh15G003430.1 Cmo15g00343 397851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00343 335 SMART exoiiiendus 130 286 IPR013520 -
Cmo15g00343 335 PANTHER OS02G0709000 PROTEIN 2 332 - -
Cmo15g00343 335 SUPERFAMILY Ribonuclease H-like 147 288 IPR012337 -
Cmo15g00343 335 ProSitePatterns Zinc finger C2H2 type domain signature. 12 34 IPR013087 -
Cmo15g00343 335 Gene3D - 129 299 IPR036397 GO:0003676
Cmo15g00343 335 Gene3D Classic Zinc Finger 1 60 - -
Cmo15g00343 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 10 39 IPR013087 -
Cmo15g00343 335 Pfam Exonuclease 156 238 IPR013520 -
Cmo15g00343 335 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 2 332 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02842 Cmo15g00343 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01857 Cmo-Chr2:10481547 Cmo15g00343 Cmo-Chr15:1597157 3.43E-104 transposed
Cmo09g00830 Cmo-Chr9:4266851 Cmo15g00343 Cmo-Chr15:1597157 5.82E-22 transposed
Cmo15g00343 Cmo-Chr15:1597157 Cmo04g02842 Cmo-Chr4:20309931 3.93E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00343 - - csv:101218614 621.313