Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00350 ATGGAGAATCCTTCAGAGAAAAAATATCCAGTGAATGCCAAGGATTATGACTTACGTGAAGAAGTTGGTGAAGGTGTCAGTGCCACTGTATACAAGGCACTGTGCATTCCGCTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTTGATGGTATTCGGCGTGAGGTTCAAACAATGACTTTGATTGATCATCCAAATTTGTTAAGAGCACATTGTTCCTTCACTGCTGGTCACTACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTGCTTATCCGGAAGGTTTTGAAGAGACTGTTATAGCTACCTTACTGCGGGAGGTTCTGAAAGCTCTTGTTTACCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGATTGATTCTAATGGTACAGTGAAATTAGCTGATTTTGGAGTCTCGGCGGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACGTTTGTCGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCCAAATACCCACCAATGAAAGTTTTGCTTATGACACTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAAAGATTTTCCAAGTCGTTCAAAGAAATGGTCGCTACATGCCTAGTGAAGGATCCAAAGAAACGGCCAAGTTCAGAGAAGCTCCTAAAGCATCCTTTTTTTAAACATGCCCGTTCAGTTGATTATCTTACTCGAACAATCCTGGATGGCCTTGCTCCGTTAGGGGAACGTTTTAAAAAGCTAAAGGCAAAAGAGGCTGATCTTCTGGTACAGAATAAAGCTTTGTATGGGGACAAGGAGCATTTGTCCCAGAGTATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCCGATACACCTGATCGGTTAGCTGCCAGACAAATATCTGCCATTCGCTTCGTGTTAGTGTCATCTAAATTCCATTATCTTGCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTGAAGAATCAGGCTGCCCTTATTCAAGATGACGATATGTCAAACATAGAAAACCTAGATGTACATACAACAAAGCAAAGAAACCAGAATAATGATTTTAGTTTTCCAGTAGAGGGCTCATCTCTTGAAAGGCTGAATCACCCAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATTTGGAGAGTTCCCTTGCTTCTTTTCCTGTAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTATGGCCAGTGGATAAAGAAAATGGAAGAACCGAGGGTGAGAGTTCGGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTTCAGCGGCTCACTAATTTCTGACAATGCCGTCTCTCCTAAAAAGATTATTGTAGATGGTGATAGTGCGAGGGATCCTTTGCCATCCCCTCACACAACAAACGCCCTTAAGGCCAAAGACAAAAGGCAGCCGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAATAACGTTTCATCTGTTGAGGATACATCAGATGGAACAGTTGTTCAACGCAAGGGGCGGTTTAAAGTGACTTCAGCAGAACTTAGTCCGAAGGGTCCTATGACGGGCTCATTTAGCCCAGTCTGTGGAGGGACGGTAAGTCCAACATCCATGAACCTCACACCTGCTCTCCTTCCATCGATGCAATGCATTTTGCAGCAGAACATCCTTCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAATCGACTGGCAAGAATCCAGATGTATCAGAGACGGTCACCAGTGACCTTCTGCAGGCTACTTCATCTAATACTATCAATGTTGACCAGACACCACCGGCTACCTTGAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATCGTCTTGTTGAAGAATTAGAGGAGCAGAAGTTGAAAAATGCCGAGACTCCACCATTCCACCATGCATTTCCGACCACAGTGGGCTACAATATGAAAAGCAAGCCACTGAGTCACTAA 2253 43.14 MENPSEKKYPVNAKDYDLREEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHYLWVVMPYMSGGSCLHIMKSAYPEGFEETVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHARSVDYLTRTILDGLAPLGERFKKLKAKEADLLVQNKALYGDKEHLSQSMKEMETEWIMDVPDTPDRLAARQISAIRFVLVSSKFHYLAQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIENLDVHTTKQRNQNNDFSFPVEGSSLERLNHPTAAASQEDGFSDLHDLESSLASFPVKPLEALKDCFDIYEDISTDSVWPVDKENGRTEGESSGQSGSLPRHYMSENKRSFSGSLISDNAVSPKKIIVDGDSARDPLPSPHTTNALKAKDKRQPSKLPSERNYSGPLLYRQKRDTNNVSSVEDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTVSPTSMNLTPALLPSMQCILQQNILQREEIVKLIKYLEQSTGKNPDVSETVTSDLLQATSSNTINVDQTPPATLRERELQSQVVHLQQRIDRLVEELEEQKLKNAETPPFHHAFPTTVGYNMKSKPLSH 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1636510 1646586 + CmoCh15G003500.1 Cmo15g00350 397858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00350 750 MobiDBLite consensus disorder prediction 530 568 - -
Cmo15g00350 750 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cmo15g00350 750 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 365 727 - -
Cmo15g00350 750 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 328 - -
Cmo15g00350 750 Coils Coil 697 724 - -
Cmo15g00350 750 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00350 750 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Cmo15g00350 750 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Cmo15g00350 750 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00350 750 CDD STKc_OSR1_SPAK 14 277 - -
Cmo15g00350 750 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 365 727 - -
Cmo15g00350 750 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 328 - -
Cmo15g00350 750 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00350 750 Gene3D Transferase(Phosphotransferase) domain 1 97 316 - -
Cmo15g00350 750 MobiDBLite consensus disorder prediction 491 506 - -
Cmo15g00350 750 MobiDBLite consensus disorder prediction 480 506 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02836 Cmo15g00350 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01271 Cmo-Chr1:10161747 Cmo15g00350 Cmo-Chr15:1636510 3.53E-70 dispersed
Cmo06g00592 Cmo-Chr6:2913131 Cmo15g00350 Cmo-Chr15:1636510 2.27E-175 dispersed
Cmo06g01271 Cmo-Chr6:9587341 Cmo15g00350 Cmo-Chr15:1636510 2.96E-09 dispersed
Cmo14g01826 Cmo-Chr14:13910049 Cmo15g00350 Cmo-Chr15:1636510 2.44E-108 dispersed
Cmo15g00350 Cmo-Chr15:1636510 Cmo18g01122 Cmo-Chr18:11582886 4.38E-56 dispersed
Cmo01g00200 Cmo-Chr1:897957 Cmo15g00350 Cmo-Chr15:1636510 0 transposed
Cmo15g00350 Cmo-Chr15:1636510 Cmo04g02836 Cmo-Chr4:20276632 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74906 PF00069 Pkinase 7.20E-60 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00350 K08835 - csv:101205102 1195.65