Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00397 ATGGCAGATGCAGAGGACATTCAGCCTCTTGTGTGCGACAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGGGCAGTCTTCCCTAGCATCGTCGGTCGTCCTCGTCACACGGGTGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACCCTGAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAAATCTGGCATCACACCTTCTATAATGAGCTTCGTGTTGCCCCAGAGGAGCATCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAAGCTAACCGTGAAAAGATGACACAAATCATGTTTGAGACATTCAACACTCCTGCCATGTATGTAGCTATTCAAGCTGTCCTCTCACTCTATGCCAGTGGTCGAACGACTGGCATTGTGATGGACTCTGGTGATGGTGTTAGTCATACAGTTCCCATCTATGAGGGTTATGCTCTTCCACATGCCATTCTTCGACTCGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTCACGGAGCGTGGATATTCATTCACTACCACAGCAGAGCGGGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTACGAGCAGGAGCTTGAAACATCCAAAACCAGTTCATCAGTTGAAAAGAGCTATGAGTTGCCTGATGGACAAGTCATCACAATCGGCGCCGAACGTTTTAGATGCCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCAGGTATTCATGAGACCACATATAATTCTATCATGAAGTGCGACGTAGATATCAGGAAGGATCTGTATGGCAACATTGTCCTCTCCGGTGGTTCGACCATGTTTACGGGCATCGCCGATAGAATGAGCAAGGAAATCTCTGCATTGGCTCCAAGCAGCATGAAGATCAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATCGGTGGTTCCATCTTGGCTTCTCTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGACGAATCTGGGCCATCGATTGTCCACAGAAAATGCTTCTAA 1134 47.62 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1826838 1828392 - CmoCh15G003970.1 Cmo15g00397 397905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00397 377 PRINTS Actin signature 28 37 IPR004000 -
Cmo15g00397 377 PRINTS Actin signature 51 62 IPR004000 -
Cmo15g00397 377 PRINTS Actin signature 63 85 IPR004000 -
Cmo15g00397 377 PRINTS Actin signature 117 130 IPR004000 -
Cmo15g00397 377 PRINTS Actin signature 142 161 IPR004000 -
Cmo15g00397 377 PRINTS Actin signature 238 254 IPR004000 -
Cmo15g00397 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmo15g00397 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmo15g00397 377 PANTHER ACTIN-97 1 376 - -
Cmo15g00397 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cmo15g00397 377 Gene3D - 140 340 - -
Cmo15g00397 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmo15g00397 377 SMART actin_3 7 377 IPR004000 -
Cmo15g00397 377 Gene3D - 10 371 - -
Cmo15g00397 377 PANTHER ACTIN 1 376 IPR004000 -
Cmo15g00397 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmo15g00397 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmo15g00397 377 Pfam Actin 5 377 IPR004000 -
Cmo15g00397 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00222 Cmo15g00397 CCT
Cmo04g01263 Cmo15g00397 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00222 Cmo-Chr4:1113504 Cmo15g00397 Cmo-Chr15:1826838 0 dispersed
Cmo04g01263 Cmo-Chr4:6409646 Cmo15g00397 Cmo-Chr15:1826838 0 dispersed
Cmo06g00095 Cmo-Chr6:553644 Cmo15g00397 Cmo-Chr15:1826838 0 dispersed
Cmo14g00419 Cmo-Chr14:1994092 Cmo15g00397 Cmo-Chr15:1826838 0 dispersed
Cmo15g00397 Cmo-Chr15:1826838 Cmo20g00447 Cmo-Chr20:2077075 0 dispersed
Cmo15g00397 Cmo-Chr15:1826838 Cmo03g00438 Cmo-Chr3:4997804 0 wgd
Cmo15g00397 Cmo-Chr15:1826838 Cmo04g02766 Cmo-Chr4:19981604 0 wgd
Cmo15g00397 Cmo-Chr15:1826838 Cmo07g01037 Cmo-Chr7:5240682 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00397 K10355 - csv:101220611 744.962