Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00409 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGCTCAACATCTTCCACCTCCGCCACCCCCGGCTGGCGGTGCTGGTGGGCCTGGCTCAATTCGACCTGGCTCGATGACGGATCGAGCTAGGTTAGCCAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCGGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCAACACCTCCTCCGCCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCAACATCAACATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAAATCATGGAAGAAACTCAAGGAATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCATGTCCACAACAACAACCACAACAACAACACCTGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1050 45.33 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNAQHLPPPPPPAGGAGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPTPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHQHQHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTMSTTTTTTTTPGNTAWSTDQISDLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1861731 1863301 - CmoCh15G004090.1 Cmo15g00409 397917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00409 349 MobiDBLite consensus disorder prediction 10 57 - -
Cmo15g00409 349 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 16 273 - -
Cmo15g00409 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 273 IPR045174 GO:0003700|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 326 349 - -
Cmo15g00409 349 MobiDBLite consensus disorder prediction 164 179 - -
Cmo15g00409 349 MobiDBLite consensus disorder prediction 132 162 - -
Cmo15g00409 349 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 114 182 - -
Cmo15g00409 349 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 11 33 - -
Cmo15g00409 349 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00409 - - - cmo:103498163 432.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00409 Cmo-Chr15:1861731 Cmo20g00451 Cmo-Chr20:2102972 2.22E-44 dispersed
Cmo14g00147 Cmo-Chr14:642536 Cmo15g00409 Cmo-Chr15:1861731 1.72E-48 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo03g00443 Cmo-Chr3:5025083 4.75E-46 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g00221 Cmo-Chr4:1111117 3.75E-50 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g01262 Cmo-Chr4:6404620 7.55E-56 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g02761 Cmo-Chr4:19969703 7.70E-155 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo06g00304 Cmo-Chr6:1499655 5.38E-49 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo07g01030 Cmo-Chr7:5100192 2.87E-33 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT1G29160 57.2 6.3e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT1G29160 52.9 3.2e-41 165.6
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT1G29160 52.4 4.6e-40 161.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT1G29160 53.8 4.6e-40 161.8
Cmo15g01373 CST 1 96 C2C2-Dof Transcription Factor Family AT1G64620 72.5 2.7e-39 160.2
Cmo13g00632 CCT,CST 16 169 C2C2-Dof Transcription Factor Family AT2G34140 56.2 6.1e-45 177.9
Cmo18g00391 CCT,CST 11 155 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.4e-41 166.8
Cmo03g01322 CCT,CST 11 161 C2C2-Dof Transcription Factor Family AT2G34140 51.8 5.5e-38 154.8
Cmo07g00184 CCT,CST 11 162 C2C2-Dof Transcription Factor Family AT2G34140 50.9 2.7e-37 152.5
Cmo04g02761 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.2 5.1e-40 162.5
Cmo14g00147 CCT,CST,ECH 1 132 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.2e-38 157.1
Cmo06g00304 CCT,CST,ECH 1 127 C2C2-Dof Transcription Factor Family AT2G37590 64.8 4.8e-38 156.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 58.0 4.1e-37 152.9
Cmo13g00132 CCT,ECH 30 104 C2C2-Dof Transcription Factor Family AT2G37590 89.3 2.0e-36 150.6
Cmo15g01373 CST 1 94 C2C2-Dof Transcription Factor Family AT4G24060 73.1 1.5e-39 161.0
Cmo01g00618 . 1 129 C2C2-Dof Transcription Factor Family AT5G02460 57.6 6.2e-40 162.5
Cmo13g00132 CCT,ECH 23 104 C2C2-Dof Transcription Factor Family AT5G02460 86.6 4.4e-38 156.4
Cmo15g00409 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 57.8 1.3e-37 154.8
Cmo03g00443 CCT,ECH 43 116 C2C2-Dof Transcription Factor Family AT5G02460 86.5 2.4e-36 150.6
Cmo03g00443 CCT,ECH 19 138 C2C2-Dof Transcription Factor Family AT3G55370 62.8 5.9e-37 152.5
Cmo13g00132 CCT,ECH 19 157 C2C2-Dof Transcription Factor Family AT3G55370 51.6 2.2e-36 150.6
Cmo11g00231 CCT,CST 26 311 C2C2-Dof Transcription Factor Family AT5G60850 53.2 3.9e-50 196.1
Cmo10g00299 CCT,CST 26 320 C2C2-Dof Transcription Factor Family AT5G60850 54.0 1.1e-47 188.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11135 PF02701 zf-Dof 1.20E-30 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00409 Cmo_Chr15 FPKM 36.828949 35.930115 27.259331 30.206539 6.513227 6.158072 6.071572 62.364334 64.745285 71.336853