Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00409 ATGGTTTTCTCTTCAGTTCCAGTGTTTCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAACCAAGTAGCTGTGAGACTAATAATGCTCAACATCTTCCACCTCCGCCACCCCCGGCTGGCGGTGCTGGTGGGCCTGGCTCAATTCGACCTGGCTCGATGACGGATCGAGCTAGGTTAGCCAAGATACCGCAACCGGAAGCTGGACTAAAATGCCCTAGATGTGAATCAACCAACACCAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACCTGTCGACGATACTGGACGAGAGGCGGGGCGATGAGGAGTGTGCCGGTTGGAGGTGGGTGTCGGCGGTCGAGTAAGAGAAGTAAAGGAGGTAGCAATAGGTCAAAATCTCCGGGAGGGTCAAGTACTTCAACAAGCACAGTGTCATCAAATAGCTGCACAACGGATATACTTAGCCACCAATTGGCTCATCCAACACCTCCTCCGCCGCCGCCGCCGCCAACCCATTTCCCATTTTTGGGTCAAAATTTGCAGCATCTTAGTGATTTTGGGAACCTGGGTTTGAACTTTGAAGCTCTTCAAATCCCATCAATGGCATCATCAGGGGGAGAATCCTCAATTTTATCAAGTGGAATTACGGATCATCATCAATGGAAAATACCCTTTTTTGCAAATTTACATCAACAAAATGGGTTGTACTCAAATTTCATGGCTGAAGAACATCATCAACATCAACATCAACATCAAGCACAAGCAGCTGATTTCTCAAATTACCAGCGTTTATCAAAGCCATTAATGGACACTGGATTTAGTTCTTCCACACCTCATCATCAATTGGGGAATATCAATAACAATACCATGAAAATCATGGAAGAAACTCAAGGAATTCACAATTTGTCAAGAAATTTCCTCGGAATTCAACCAAACGATCCGTTCTGGAATTCCACCATGTCCACAACAACAACCACAACAACAACACCTGGGAATACCGCATGGAGTACCGATCAAATTTCGGATCTTTTATAA 1050 45.33 MVFSSVPVFLDPPNWPSQQPNQLQPSSCETNNAQHLPPPPPPAGGAGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSKGGSNRSKSPGGSSTSTSTVSSNSCTTDILSHQLAHPTPPPPPPPPTHFPFLGQNLQHLSDFGNLGLNFEALQIPSMASSGGESSILSSGITDHHQWKIPFFANLHQQNGLYSNFMAEEHHQHQHQHQAQAADFSNYQRLSKPLMDTGFSSSTPHHQLGNINNNTMKIMEETQGIHNLSRNFLGIQPNDPFWNSTMSTTTTTTTTPGNTAWSTDQISDLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1861731 1863301 - CmoCh15G004090.1 Cmo15g00409 397917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00409 349 MobiDBLite consensus disorder prediction 10 57 - -
Cmo15g00409 349 PANTHER DOF ZINC FINGER PROTEIN DOF2.4-LIKE 16 273 - -
Cmo15g00409 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 273 IPR045174 GO:0003700|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 326 349 - -
Cmo15g00409 349 MobiDBLite consensus disorder prediction 164 179 - -
Cmo15g00409 349 MobiDBLite consensus disorder prediction 132 162 - -
Cmo15g00409 349 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 114 182 - -
Cmo15g00409 349 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
Cmo15g00409 349 MobiDBLite consensus disorder prediction 11 33 - -
Cmo15g00409 349 Pfam Dof domain, zinc finger 73 127 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00409 Cmo-Chr15:1861731 Cmo20g00451 Cmo-Chr20:2102972 2.22E-44 dispersed
Cmo14g00147 Cmo-Chr14:642536 Cmo15g00409 Cmo-Chr15:1861731 1.72E-48 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo03g00443 Cmo-Chr3:5025083 4.75E-46 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g00221 Cmo-Chr4:1111117 3.75E-50 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g01262 Cmo-Chr4:6404620 7.55E-56 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo04g02761 Cmo-Chr4:19969703 7.70E-155 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo06g00304 Cmo-Chr6:1499655 5.38E-49 wgd
Cmo15g00409 Cmo-Chr15:1861731 Cmo07g01030 Cmo-Chr7:5100192 2.87E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11135 PF02701 zf-Dof 1.20E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00409 - - cmo:103498163 432.565