Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00423 ATGAGGTGGTTTAGAGCAAGCTCTGCTATAGCAAAACTTGCCATTAAGAGAAGCATAGTGCAGGGAGGATCATATGTTGGGAGATCAAGGATCGGTGCATCTCAAAGTCGATATTTTCATTCCACACTCTTTAAATCAAAGGCTCAAGGTGCTCCAGTTCCACGTTCTGTTCCCCTTTCTAGGCTTACTGATAGCTTCTTAGATGGAACTAGCAGTGTCTACTTAGAGGAACTTCAAAGAGCTTGGGAGGCTGACCCTACCAGTGTTGATGAGTCATGGGATAATTTCTTCAGGAACTTCGTGGGTCAGGCTGCCACATCTCCTGGCATTTCTGGCCAAACAATACAAGAGAGTATGCGTTTATTGTTGCTTGTGAGAGCATATCAGGTTAATGGTCACATGAAAGCCAAGTTGGATCCATTGGGATTGGAAGAAAGGAAAATTCCTGATGAGTTGGACCTTGCACATCATGGTTTCACAGAAGCTGATCTTGATCGTGAATTCTTCTTGGGGGTGTGGAAAATGGCTGGGTTTTTGTCTGAGAATCGTCCTGTTCAGACCCTTAGATACACTTTGACCCGTCTAGAGCAAGCATATTGTGGAAGCATTGGATATGAGTACATGCATATTGCCGACCGTGAAAAATGTAATTGGTTGAGGGACAAGATTGAGACCCCAACACCAACACAATACAATCGCCAGCGCAAAGAGGTTATTCTCGATCGTCTTATATGGAGCACACAATTTGAGAACTTTTTGGCAACTAAGTGGACCACAGCAAAGAGATTTGGGCTTGAAGGAGGGGAGACTCTGATTCCAGGGATGAAAGAAATGTTTGACAGGGCTGCAGATCTCGGAGTTGAGAGCATAGTTATAGGAATGCCTCATAGAGGGAGATTAAATGTCTTGGGTAATGTTGTCAGAAAACCACTGCGTCAAATATTTAGTGAGTTTAGTGGCGGTACAAAGCCTGTAAATGAGGTTGGGCTCTATACAGGAACTGGTGATGTGAAGTATCACTTGGGAACCTCTTATGACCGGCCAACTAGGGGTGGCAAGAGAATTCACCTTTCCTTGGTCGCTAATCCAAGTCATTTGGAAGCTGTTGATCCTTTGGTTGTTGGGAAAACTCGGGCAAAGCAATTCTACTCCAATGATGTGGATAGGAAAAGGAATATGGGTATTTTGATACATGGAGATGGTAGTTTTGCTGGACAAGGTGTTGTGTATGAGACTTTACATCTCAGCGCTCTTCCTAACTACACCACTGGTGGGACTATTCACATTGTTGTAAACAATCAGGTAGCTTTTACCACTGACCCAAGGTCAGGAAGATCCTCACAGTATTGCACTGATGTTGCCAAAGCCTTGGATGCACCCATCTTCCACGTGAATGGAGATGATGTGGAAGCAGTTGTTCATGTATGTGAGCTAGCTGCAGAATGGCGCCAGACTTTCCATTCAGATGTTGTTGTTGATTTGGTTTGTTACCGCCGTTTTGGGCACAACGAGATTGATGAGCCATCATTCACCCAGCCTAAAATGTATCAGGTTATTAGGAATCATCCCTCATCTCTTGAAATCTACCGAAAGAAACTTTTAGAATTGGAGCAGGTGACTCAAGAAGACATTGAGAAGATACAATCCAAGGTCAATACAATACTTAATGAAGAATTTATGGCCAGCAAAGATTACCTTCCTAAAAGAAGGGACTGGCTTTCAGCTTATTGGGCTGGATTCAAGTCCCCTGAACAGCTCTCACGCATTCGGAATACAGGGGTTAAACCAGAAATCTTGAAGAATGTAGGAAAAGCTATTACATCCCTTCCAGATAACTTCAAGCCTCACAGGTCAGTCAAAAAGGTGTATGAACAGCGTGCCCAAATGATTGAAACTGGGGATGGCATTGACTGGGCCCTTGGAGAAGCACTTGCTTTTGCCACATTGTTAGTGGAAGGTAACCATGTCAGATTAAGTGGACAGGATGTTGAAAGAGGCACCTTTAGCCACAGACACTCGGTTCTTCATGATCAGGAAACAGGAGAGAAGTACTGCCCTCTTGATCATGTTCTGTTAAACCAGAATGAAGAAATGTTTACTGTCAGCAACAGCTCTCTTTCAGAGTTTGGCGTTCTTGGATTTGAGTTGGGCTATTCAATGGAAAATCCCAATGCGTTGGTAATGTGGGAAGCTCAATTTGGTGATTTTGCTAATGGAGCTCAAGTAATATTTGATCAGTTCATTAGTAGTGGAGAAGCGAAATGGTTGCGACAAACAGGACTTGTTGTGTTACTTCCACATGGCTATGATGGGCAGGGACCTGAACATTCAAGTGCAAGATTGGAGCGTTTTCTTCAGATGAGTGATGACAACCCTTTTGTTATACCTGAGATGGATCCTACTCTTAGGAAGCAAATTCAGGAGTGCAATTGGCAAGTTGTGAACGTTACAACTCCTGCAAACTACTTCCATGTTCTGAGGCGTCAGATTCACAGGGAATTCCGTAAACCTCTTATTGTAATGTCTCCTAAGAACCTGCTTCGTCATAAAGACTGCAGGTCTAATCTATCTGAGTTTGATGATGTAAAAGGCCACCCAGGTTTTGATAAGCAGGGGACTAGATTTAAGCGCCTTATCAAGGACCAAAATATGCACTCTGATCTTGAAGAAGGCATCAGGCGTTTGATCCTTTGCTCTGGAAAGATTTATTATGAACTTGATGAAAAGCGGAAAAATATCGATGGAAAGGACATTGCAATATGCCGGGTGGAACAGCTATGTCCATTCCCATATGATCTTATCCAACGAGAGCTGAAGCGATATCCAAATGCCGAGGTTGTTTGGGTCCAAGAGGAGCCAATGAACATGGGTGCGTATAGCTACATTAATCCTCGTCTTGGTTCAGCCATGAAGAATCTATCCCGAGGAACAATTGAAGACATCAAATACGTTGGTCGTGCTCCATCTGCAGCTACAGCCACTGGTTTCTATCAAGTTCATGTTAAAGAGCAAACCGAGATTATTGAGAAAGCACTGCAGCCTGACCCGATCCCATATCCCCATTGCAGTCCCTCCACATTCGTTTAG 3087 43.67 MRWFRASSAIAKLAIKRSIVQGGSYVGRSRIGASQSRYFHSTLFKSKAQGAPVPRSVPLSRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEERKIPDELDLAHHGFTEADLDREFFLGVWKMAGFLSENRPVQTLRYTLTRLEQAYCGSIGYEYMHIADREKCNWLRDKIETPTPTQYNRQRKEVILDRLIWSTQFENFLATKWTTAKRFGLEGGETLIPGMKEMFDRAADLGVESIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVNEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPLVVGKTRAKQFYSNDVDRKRNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRSGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHVCELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSSLEIYRKKLLELEQVTQEDIEKIQSKVNTILNEEFMASKDYLPKRRDWLSAYWAGFKSPEQLSRIRNTGVKPEILKNVGKAITSLPDNFKPHRSVKKVYEQRAQMIETGDGIDWALGEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVLHDQETGEKYCPLDHVLLNQNEEMFTVSNSSLSEFGVLGFELGYSMENPNALVMWEAQFGDFANGAQVIFDQFISSGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKDCRSNLSEFDDVKGHPGFDKQGTRFKRLIKDQNMHSDLEEGIRRLILCSGKIYYELDEKRKNIDGKDIAICRVEQLCPFPYDLIQRELKRYPNAEVVWVQEEPMNMGAYSYINPRLGSAMKNLSRGTIEDIKYVGRAPSAATATGFYQVHVKEQTEIIEKALQPDPIPYPHCSPSTFV 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1906659 1914095 + CmoCh15G004230.1 Cmo15g00423 397931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00423 1028 Pfam Transketolase, pyrimidine binding domain 635 850 IPR005475 -
Cmo15g00423 1028 TIGRFAM 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 113 1011 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo15g00423 1028 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 619 855 IPR029061 -
Cmo15g00423 1028 CDD TPP_E1_OGDC_like 249 516 - -
Cmo15g00423 1028 Pfam Dehydrogenase E1 component 244 565 IPR001017 GO:0016624
Cmo15g00423 1028 Gene3D - 592 864 - -
Cmo15g00423 1028 PANTHER 2-OXOGLUTARATE DEHYDROGENASE 1 1018 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo15g00423 1028 SMART Transket_pyr_3 636 849 IPR005475 -
Cmo15g00423 1028 Pfam 2-oxoglutarate dehydrogenase N-terminus 64 102 IPR032106 -
Cmo15g00423 1028 Gene3D TPP helical domain 114 201 - -
Cmo15g00423 1028 PIRSF Oxoglu_dh_E1 57 1014 IPR011603 GO:0004591|GO:0006099|GO:0030976
Cmo15g00423 1028 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 149 581 IPR029061 -
Cmo15g00423 1028 Pfam 2-oxoglutarate dehydrogenase C-terminal 871 1012 IPR031717 -
Cmo15g00423 1028 Gene3D - 202 572 - -
Cmo15g00423 1028 Gene3D - 867 1014 IPR042179 -
Cmo15g00423 1028 PANTHER 2-OXOGLUTARATE DEHYDROGENASE, MITOCHONDRIAL-LIKE 1 1018 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01270 Cmo15g00423 CCT
Cmo04g00226 Cmo15g00423 CCT
Cmo04g02749 Cmo15g00423 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00650 Cmo-Chr12:4176349 Cmo15g00423 Cmo-Chr15:1906659 1.01E-06 dispersed
Cmo15g00423 Cmo-Chr15:1906659 Cmo04g00226 Cmo-Chr4:1127045 0 wgd
Cmo15g00423 Cmo-Chr15:1906659 Cmo04g01270 Cmo-Chr4:6434871 0 wgd
Cmo15g00423 Cmo-Chr15:1906659 Cmo04g02749 Cmo-Chr4:19903662 1.03E-34 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00423 K00164 - csv:101208883 1996.86