Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00424 ATGAAGCAGGCAGGTCAAATGTTTGAGAAGGCAAAGCCATACTTGGGAGCAATAGCATTAAGATTTGGTTCTGCAGGAATGTCAATTATTTCTAAGGCTGCTCTAAACCAAGGAATGAACCAACTTGTTACCATTGTTTATCGTTACTCTATCGGTGCCATTGTTGTTGCTCCTTTTGCTTTCGTCTTGGATAGGAAAGTGAGACCGAAGATGACTCTCCCCATCTTCGCCAAGATTCTTCTACTCGGCTTACTCGAGCCTGTAATAGCCCAGAGCTTGATTTACGCTGGTACTAAATACACAACTGCAACTTTTGCAACAGCCATGTGCAATATTCTTCCGGCTTTTGCATTTATAATGGCTTGGATTTGCAAAATGGAGAAGGTGAATATTAGAAGATTAAGAAGCCAGGCAAAGATTTTAGGGACTTTAGTTACAGTAGGAGGAGCAATGATGATGACTCTTATAAAAGGACCCTTGTTGAGTTTACCTTGGACCAAAGAGAACTCCAACCCTCACTCTTATTCAAGCCTTGGAAACAAGCAAGAACCTGTTAAGGCTGCCATTGTTATCTCCATCTCAAGTATCTGCTCCTCTGCCTTCACCATCCTTCTGGCACATACAATAAGGTCATACCCAGCTGAGTTCACACTAACAACTTTCATATGCTTGGCTGGAGCAGTGGAAAGTACTATTTTAGCGTTAGCATTTGAATGGAACAATCCAGCTGCATGGGCTTTACATGCAGACTCCATACTCTTAGCTGCCCTCTATGGTGGAATAATATCTTCTGGAATTGCGTACTATATCCAAGGAGTGGTGGTGAAATTAAAAGGACCTGTATTTGTTACTGCATTCAATCCTCTCAGCATGGTCGTAGTTGCTGTGATTAGTTCTTTCATATTCGCCGAGAGGCTGCGCTTAGGAAGTTCTTTAGTGGGTTTAACTTTCATTATAAATGACTTCTTTCAAGCACTCAACCGAAGTTCTTTTAGTGCTAATTTGGTGGTATTATTGGTTATTGGAGCAGTTGTGATAATTATAGGCCTATACTTGGTTTTGTGGGGCAAGAGCAAAGATAAAGTTCCATTCAAAGTGGGGAATAACAATACTGATGAATTGCCAACTTCACTCCAAGACTCAACTACCACAAACCAGCAGCAGCCAAAGCCCTTAGATCAACAACATCTCAAAGCTGCTGCCCCAACAACAGTAAGCAACTGA 1224 41.67 MKQAGQMFEKAKPYLGAIALRFGSAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFAFVLDRKVRPKMTLPIFAKILLLGLLEPVIAQSLIYAGTKYTTATFATAMCNILPAFAFIMAWICKMEKVNIRRLRSQAKILGTLVTVGGAMMMTLIKGPLLSLPWTKENSNPHSYSSLGNKQEPVKAAIVISISSICSSAFTILLAHTIRSYPAEFTLTTFICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIISSGIAYYIQGVVVKLKGPVFVTAFNPLSMVVVAVISSFIFAERLRLGSSLVGLTFIINDFFQALNRSSFSANLVVLLVIGAVVIIIGLYLVLWGKSKDKVPFKVGNNNTDELPTSLQDSTTTNQQQPKPLDQQHLKAAAPTTVSN 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1916632 1919058 + CmoCh15G004240.1 Cmo15g00424 397932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00424 407 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cmo15g00424 407 MobiDBLite consensus disorder prediction 373 407 - -
Cmo15g00424 407 PANTHER WAT1-RELATED PROTEIN 9 320 - -
Cmo15g00424 407 PANTHER WAT1-RELATED PROTEIN 331 365 - -
Cmo15g00424 407 Pfam EamA-like transporter family 187 312 IPR000620 GO:0016020|GO:0016021
Cmo15g00424 407 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cmo15g00424 407 PANTHER WAT1-RELATED PROTEIN 9 320 IPR030184 GO:0016021|GO:0022857
Cmo15g00424 407 PANTHER WAT1-RELATED PROTEIN 331 365 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01271 Cmo15g00424 CCT
Cmo04g00228 Cmo15g00424 CCT
Cmo04g00228 Cmo15g00424 ECH
Cmo04g01271 Cmo15g00424 ECH
Cmo04g02748 Cmo15g00424 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02748 Cmo-Chr4:19897348 Cmo15g00424 Cmo-Chr15:1916632 0 dispersed
Cmo15g00424 Cmo-Chr15:1916632 Cmo04g01270 Cmo-Chr4:6434871 1.98E-112 dispersed
Cmo15g00424 Cmo-Chr15:1916632 Cmo03g00455 Cmo-Chr3:5080508 2.25E-132 wgd
Cmo15g00424 Cmo-Chr15:1916632 Cmo04g00227 Cmo-Chr4:1137645 7.67E-127 wgd
Cmo15g00424 Cmo-Chr15:1916632 Cmo04g02746 Cmo-Chr4:19879893 3.43E-132 wgd
Cmo15g00424 Cmo-Chr15:1916632 Cmo07g01014 Cmo-Chr7:5018602 8.84E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00424 - - csv:101208640 581.252