Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00444 ATGCAGTCTCCGCCGCCGCCGCCGCCGCCGCTGATGGTGGTTCTCAGCCCTTGCGCCGCCTGTAAGATCCTCCGCCGGAGATGCGTCGATAAGTGTGTTTTAGCGCCTTATTTTCCTCCGACTGAGCCACTCAAGTTCGCCGCCGTGCATAGAATATTTGGAGCCGGCAACGTAATCAAGTTTCTGCAGGAACTTCCAGAGAACCAGAGAGCGGATGCTACAAGCAGTTTAGTATATGAAGCCAACGCTAGGATTCGAGACCCCGTCTATGGTTGCACTGGTTCAATTTTTCAGCTGCAAAATCAAGTGAGCGAGCTCCAAGTGCAACTAGCCGTGGCTAAGGCTGAGGATAATTTTCATGTATTTACGTTCGGAGTCGTGGACAATCTGTTAGTCCGATTCCGATTATGA 411 51.58 MQSPPPPPPPLMVVLSPCAACKILRRRCVDKCVLAPYFPPTEPLKFAAVHRIFGAGNVIKFLQELPENQRADATSSLVYEANARIRDPVYGCTGSIFQLQNQVSELQVQLAVAKAEDNFHVFTFGVVDNLLVRFRL 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2017329 2022583 - CmoCh15G004440.1 Cmo15g00444 397952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00444 136 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cmo15g00444 136 PANTHER DOMAIN PROTEIN 1, PUTATIVE, EXPRESSED-RELATED 10 116 - -
Cmo15g00444 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 116 - -
Cmo15g00444 136 Coils Coil 96 116 - -
Cmo15g00444 136 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00564 Cmo-Chr1:2827611 Cmo15g00444 Cmo-Chr15:2017329 4.53E-53 dispersed
Cmo02g00870 Cmo-Chr2:5297039 Cmo15g00444 Cmo-Chr15:2017329 4.31E-55 dispersed
Cmo13g00196 Cmo-Chr13:1406230 Cmo15g00444 Cmo-Chr15:2017329 5.10E-54 dispersed
Cmo15g00444 Cmo-Chr15:2017329 Cmo20g00502 Cmo-Chr20:2396456 4.46E-53 dispersed
Cmo15g00444 Cmo-Chr15:2017329 Cmo04g00277 Cmo-Chr4:1399587 2.19E-59 wgd
Cmo15g00444 Cmo-Chr15:2017329 Cmo04g01315 Cmo-Chr4:6708105 9.29E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11136 PF03195 LOB 1.40E-41 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00444 - - mnt:21397274 189.504