Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g00445 | ATGGGGAAGAAGGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGGTTCTTATGGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTTGCCGCCGAGGCCGCCGTCGCAGCCGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCCCTAGGTACTCCGGGAAATCAAAGGAAGAGATAGCAGCCATCAAGATCCAGACTACATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTTATGGATCCGAACAATCCCCATTGGGGATGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCTAAGATCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGTGCGATCAGCCATGCGACCTCGATCGGAGACATTTCCAAATCTTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTACAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGTGCATTGAGCGTCAAATCGGAGCGGTACCGGCGACACAGCATCGCCGGATCATCCGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCCAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGAACTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCAAGAATGTTGCAGACAGAGATTTCACCGGCGAGAGCCGGTAG | 1395 | 52.33 | MGKKGGWFSAVKKAFATESKEKKEQVLMAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTTFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKITADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSTRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTNPIKNVADRDFTGESR | 464 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 2025442 | 2029376 | - | CmoCh15G004450.1 | Cmo15g00445 | 397953 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g00445 | 464 | MobiDBLite | consensus disorder prediction | 397 | 415 | - | - | |
| Cmo15g00445 | 464 | MobiDBLite | consensus disorder prediction | 303 | 330 | - | - | |
| Cmo15g00445 | 464 | SMART | iq_5 | 92 | 114 | IPR000048 | GO:0005515 | |
| Cmo15g00445 | 464 | MobiDBLite | consensus disorder prediction | 374 | 390 | - | - | |
| Cmo15g00445 | 464 | Coils | Coil | 156 | 176 | - | - | |
| Cmo15g00445 | 464 | ProSiteProfiles | IQ motif profile. | 93 | 121 | IPR000048 | GO:0005515 | |
| Cmo15g00445 | 464 | MobiDBLite | consensus disorder prediction | 298 | 464 | - | - | |
| Cmo15g00445 | 464 | MobiDBLite | consensus disorder prediction | 356 | 373 | - | - | |
| Cmo15g00445 | 464 | PANTHER | IQ-DOMAIN 5-RELATED | 27 | 449 | - | - | |
| Cmo15g00445 | 464 | Pfam | IQ calmodulin-binding motif | 96 | 114 | IPR000048 | GO:0005515 | |
| Cmo15g00445 | 464 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 27 | 449 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g01429 | Cmo15g00445 | CCT | |
| Cmo04g01429 | Cmo15g00445 | ECH | |
| Cmo04g02721 | Cmo15g00445 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00134 | Cmo-Chr6:729473 | Cmo15g00445 | Cmo-Chr15:2025442 | 2.50E-19 | dispersed | |
| Cmo10g00895 | Cmo-Chr10:4380090 | Cmo15g00445 | Cmo-Chr15:2025442 | 1.18E-50 | dispersed | |
| Cmo11g00931 | Cmo-Chr11:4836470 | Cmo15g00445 | Cmo-Chr15:2025442 | 1.15E-50 | dispersed | |
| Cmo14g01466 | Cmo-Chr14:11869700 | Cmo15g00445 | Cmo-Chr15:2025442 | 1.59E-24 | dispersed | |
| Cmo15g00445 | Cmo-Chr15:2025442 | Cmo18g00887 | Cmo-Chr18:10128215 | 8.48E-121 | dispersed | |
| Cmo17g00478 | Cmo-Chr17:3532699 | Cmo15g00445 | Cmo-Chr15:2025442 | 1.07E-35 | dispersed | |
| Cmo19g00901 | Cmo-Chr19:8495660 | Cmo15g00445 | Cmo-Chr15:2025442 | 9.13E-16 | dispersed | |
| Cmo15g00445 | Cmo-Chr15:2025442 | Cmo04g01429 | Cmo-Chr4:7278716 | 6.73E-98 | wgd | |
| Cmo15g00445 | Cmo-Chr15:2025442 | Cmo04g02721 | Cmo-Chr4:19731029 | 0 | wgd | |
| Cmo15g00445 | Cmo-Chr15:2025442 | Cmo06g00353 | Cmo-Chr6:1719317 | 2.19E-10 | wgd | |
| Cmo15g00445 | Cmo-Chr15:2025442 | Cmo07g00981 | Cmo-Chr7:4829625 | 8.50E-116 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g00445 | - | - | csv:101209731 | 738.028 |