Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00445 ATGGGGAAGAAGGGGGGATGGTTTTCTGCTGTGAAGAAGGCATTTGCTACTGAATCTAAGGAAAAGAAAGAGCAGGTTCTTATGGCTCCATTGGATGTGTCTGTTCTTCCTATTGAAGAGGTGAAGCTAGTTGATGCAGAGAATGAACAGAGCAAACATGCTTATTCTGTTGCCATTGCCACTGCAGTTGCCGCCGAGGCCGCCGTCGCAGCCGCTCAGGCTGCGGCGGAGGTCGTTCGGCTCACTACCATCCCTAGGTACTCCGGGAAATCAAAGGAAGAGATAGCAGCCATCAAGATCCAGACTACATTCCGTGGCTATATGGCAAGGAGGGCGCTGCGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTGATCCAAGGCCAGTCTGTTAAGAGACAAGCAACCACCACATTAAGATGCATGCAGACGCTTGCTCGTGTGCAGTCACAGGTGCGTGGAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTCCAGAGGCAGCTCCAACAAAAACATGAAAGAGAGCTTCACAGATTAACTGCTTCTGCAAACAATGAATGGAATGACAGTACCAAATCAAAGCAGCAAATTGAAGCCAGACAAGTTTACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGAATTCAGGCAAGAATTCTTCCAAATCTGCAAACCCTACATTTATGGATCCGAACAATCCCCATTGGGGATGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCTAAGATCACCGCCGATTGTCACGATCGCGGCTCTGTCAAGAGTGCGATCAGCCATGCGACCTCGATCGGAGACATTTCCAAATCTTACTCCCGTCGCGATCTCAATCTCGACATCAAGCCATTTCCAAGGACTCCGACGAGCCAGAAAACAAGCCGAGCTCCAAGTCGCCAATCGCCGGCAACTCCTACGAAGGCGCATTCGTCGCTATCTGCAGGGAGAAAATTGAAGCCGGATAGTACAAGAGGATTCGGCTGGAGTGGAGACGCCGATTCCCGAAGTGCATTGAGCGTCAAATCGGAGCGGTACCGGCGACACAGCATCGCCGGATCATCCGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCAGTTCCAAGCTACATGGCGTCCACAGAAGCAGCCAGGGCAAGGTCCCGGTTGTCGAGTCCAATGGGAACGGAGAATACGGCAGCGACTCCAGATAAGGCACCAGCCAGTGGCGGCGTAAAGAAACGGCTCTCGTTCCCCGCCTCGCCGGCGAACTCGAGGAGGCACTCTGGTCCGCCGAAAGTAGACACTAACCCGATCAAGAATGTTGCAGACAGAGATTTCACCGGCGAGAGCCGGTAG 1395 52.33 MGKKGGWFSAVKKAFATESKEKKEQVLMAPLDVSVLPIEEVKLVDAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTTFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQVRGRRIRMSEENQALQRQLQQKHERELHRLTASANNEWNDSTKSKQQIEARQVYRQEAATRRERALAYAYSHQNSGKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEAKITADCHDRGSVKSAISHATSIGDISKSYSRRDLNLDIKPFPRTPTSQKTSRAPSRQSPATPTKAHSSLSAGRKLKPDSTRGFGWSGDADSRSALSVKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTENTAATPDKAPASGGVKKRLSFPASPANSRRHSGPPKVDTNPIKNVADRDFTGESR 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2025442 2029376 - CmoCh15G004450.1 Cmo15g00445 397953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00445 464 MobiDBLite consensus disorder prediction 397 415 - -
Cmo15g00445 464 MobiDBLite consensus disorder prediction 303 330 - -
Cmo15g00445 464 SMART iq_5 92 114 IPR000048 GO:0005515
Cmo15g00445 464 MobiDBLite consensus disorder prediction 374 390 - -
Cmo15g00445 464 Coils Coil 156 176 - -
Cmo15g00445 464 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Cmo15g00445 464 MobiDBLite consensus disorder prediction 298 464 - -
Cmo15g00445 464 MobiDBLite consensus disorder prediction 356 373 - -
Cmo15g00445 464 PANTHER IQ-DOMAIN 5-RELATED 27 449 - -
Cmo15g00445 464 Pfam IQ calmodulin-binding motif 96 114 IPR000048 GO:0005515
Cmo15g00445 464 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 27 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00445 - - - csv:101209731 738.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g01429 Cmo15g00445 CCT
Cmo04g01429 Cmo15g00445 ECH
Cmo04g02721 Cmo15g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00134 Cmo-Chr6:729473 Cmo15g00445 Cmo-Chr15:2025442 2.50E-19 dispersed
Cmo10g00895 Cmo-Chr10:4380090 Cmo15g00445 Cmo-Chr15:2025442 1.18E-50 dispersed
Cmo11g00931 Cmo-Chr11:4836470 Cmo15g00445 Cmo-Chr15:2025442 1.15E-50 dispersed
Cmo14g01466 Cmo-Chr14:11869700 Cmo15g00445 Cmo-Chr15:2025442 1.59E-24 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo18g00887 Cmo-Chr18:10128215 8.48E-121 dispersed
Cmo17g00478 Cmo-Chr17:3532699 Cmo15g00445 Cmo-Chr15:2025442 1.07E-35 dispersed
Cmo19g00901 Cmo-Chr19:8495660 Cmo15g00445 Cmo-Chr15:2025442 9.13E-16 dispersed
Cmo15g00445 Cmo-Chr15:2025442 Cmo04g01429 Cmo-Chr4:7278716 6.73E-98 wgd
Cmo15g00445 Cmo-Chr15:2025442 Cmo04g02721 Cmo-Chr4:19731029 0 wgd
Cmo15g00445 Cmo-Chr15:2025442 Cmo06g00353 Cmo-Chr6:1719317 2.19E-10 wgd
Cmo15g00445 Cmo-Chr15:2025442 Cmo07g00981 Cmo-Chr7:4829625 8.50E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00445 Cmo_Chr15 FPKM 31.186916 37.003078 19.196236 19.543884 11.897404 11.823285 11.045196 42.434425 47.204208 46.120968