Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00471 ATGGATTCAGTGATCGAACCGATGAGGAACCATGAGAAGTATTTAGATTCTCAGCTATGGCATGCTTGTGCAGGTGGGCTGATTGAATTGCCTACCATTGACTCGAAGGTAGTGTACTTTCCTCAGGGCCATGCCGAGCATGCCCAGGAGAATGTTGATTTCGGGGTAGCGCAAATTCCTTCGCTCATACCTTGCAGGGTATCTGGGATCAGACATATGGCTGATTCTGAAACTGATGAGGTTTTTGCTAATATAAGGTTGATTCCATTGAGGAACAATGAATTTAGTTTGGATGATGATGATGAGCTTCTAGGCCACAATGATATTAGGACTCGGGAGAAACCCGCCTCGTTTGCTAAGACGTTGACACAATCTGATGCTAACAATGGTGGAGGATTCTCCGTGCCTCGTTACTGTGCTGAGACAATGTTTCCTCGGTTGGATTACTCGGCGGAGCCGCCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGATTTGGAAGTTTAGGCATATATACAGAGGGACTCCCCGACGTCATCTTTTGACGACGGGATGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCGATCGTTTTCCTGAGGGCGGAAACTGGCGATCTTTTCATCGGAGTTAGGCGAGCCAAGCGGGGAAATGGTTATGGAATTGATTATGAAACTGGTTGGGATCCAACTAATTCAGCCTCTCCACTTGTGGGGTATTCTGATTTTATGAGGGACAATGAAGGTAGATTGGTAAGAAGAATCTCAAATGGGAATTCGAGCGGGAGAGTGACGGTAGAATCTGTCATCGAAGCTGCAATGCTTGCTGCCAGTGGCAAGCCCTTTGAGATTGTGTACTACCCGTGCACTGGTACTCCTGAGTTCGTCGTTAAGGCGTCTTGTTCATTGGTATCCTGCGATGAGATTCAAGATGCCTTTCGAAACCAAGGATTCGTCTCGGATAAGCTGGTAGCTGATCCTGTTCGGTGGCCTGATTCTCCGTGGCGAATGCTGCAGGTGGCATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTATCAACCCATGGTTGGTTGAAGTGGTAGTAAACATGCCAGCCATCCATGTCTCCCCGTTCTCGCCACCGAGGAAGAAGCAGCGGTTTCACCCGGCAGAAACTGCTGTATTTGGTCATCTTCCAATGCCATCGTTTTCGACGAATTTCTTCGAAACAACCAGCTCGTTACAAAGTGTTACAGGTAATAACATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCTGACTTTCAGCTCAGCAAACTAAATTTGGGACCATGTTCTGCTGGTTTTAAGCACCTTGATGAGGCCACTCCTCTTCCTGGCACCCCAGGTGAAAATATGTTCGGAGGCATGAAAAGCCCTGATAATTCTCATTGGCTAACGATGGGAAATAATACCGAAAGCTCGAAAGACAGCAAAGAAACAAAACCGGATCATATCATATTGTTCGGTCAACTCATTCTCCCTAATCAACTGATTTCTAACAGCTGCTCGGCCGATACAACGAATGCATCGTATGAAAACCAAGGGAAATCATCGAATCCTTCCGACGGTTCTGGTTTATCGTCACAACAGAATGGTTCATTGGAGAATTCATCAGAGGGAGGATCTACCTCGTATAATGGTCACGAAAAAACCGGTTTTAGCTTGAACACTGGTCAATGCAAAGTGTTCATGGAATTCGAGGACATCGGTCGTACTCTTAATCTATCGCTTCTCAGGTCGTACGACGAATTGTATGGAAAACTTGCCAATATGTTCGGTGTAGGAAGCTCAGAGATGCTGAATTGTGTTCTTTATGAGGATGCACTCGGTACAACGAAGCAAGCGGGAGACGAGCCTTTCAGCACGTTTCTGAAGACGGCGAGAAAACTAACCATACTTACAGATTCTCGAAGTAGCGACAACAGTAAAACGTAG 1995 46.27 MDSVIEPMRNHEKYLDSQLWHACAGGLIELPTIDSKVVYFPQGHAEHAQENVDFGVAQIPSLIPCRVSGIRHMADSETDEVFANIRLIPLRNNEFSLDDDDELLGHNDIRTREKPASFAKTLTQSDANNGGGFSVPRYCAETMFPRLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLFIGVRRAKRGNGYGIDYETGWDPTNSASPLVGYSDFMRDNEGRLVRRISNGNSSGRVTVESVIEAAMLAASGKPFEIVYYPCTGTPEFVVKASCSLVSCDEIQDAFRNQGFVSDKLVADPVRWPDSPWRMLQVAWDEPDLLQNVKSINPWLVEVVVNMPAIHVSPFSPPRKKQRFHPAETAVFGHLPMPSFSTNFFETTSSLQSVTGNNIPAGIQGARHTQFGLSSPDFQLSKLNLGPCSAGFKHLDEATPLPGTPGENMFGGMKSPDNSHWLTMGNNTESSKDSKETKPDHIILFGQLILPNQLISNSCSADTTNASYENQGKSSNPSDGSGLSSQQNGSLENSSEGGSTSYNGHEKTGFSLNTGQCKVFMEFEDIGRTLNLSLLRSYDELYGKLANMFGVGSSEMLNCVLYEDALGTTKQAGDEPFSTFLKTARKLTILTDSRSSDNSKT 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2129289 2131775 - CmoCh15G004710.1 Cmo15g00471 397979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00471 664 SMART B3_2 118 220 IPR003340 GO:0003677
Cmo15g00471 664 CDD B3_DNA 117 218 IPR003340 GO:0003677
Cmo15g00471 664 PANTHER AUXIN RESPONSE FACTOR 16 8 654 - -
Cmo15g00471 664 SUPERFAMILY DNA-binding pseudobarrel domain 109 222 IPR015300 -
Cmo15g00471 664 Gene3D - 306 371 - -
Cmo15g00471 664 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Cmo15g00471 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo15g00471 664 Gene3D - 116 220 IPR015300 -
Cmo15g00471 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Cmo15g00471 664 MobiDBLite consensus disorder prediction 463 501 - -
Cmo15g00471 664 ProSiteProfiles PB1 domain profile. 577 657 IPR000270 GO:0005515
Cmo15g00471 664 MobiDBLite consensus disorder prediction 527 570 - -
Cmo15g00471 664 Gene3D - 575 660 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02692 Cmo15g00471 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00471 Cmo-Chr15:2129289 Cmo20g00525 Cmo-Chr20:2533242 0 dispersed
Cmo15g00471 Cmo-Chr15:2129289 Cmo03g01235 Cmo-Chr3:9536729 0 wgd
Cmo15g00471 Cmo-Chr15:2129289 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo15g00471 Cmo-Chr15:2129289 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11139 PF02362 B3 8.70E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00471 - - cmo:103496426 993.03