Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00508 | ATGTTTGCTACCACTGGCATTCTGTTCTTCATCTGGGTTTTGAGCTCATCTCTGCCTCCTCCTGCCATGGCTACTTTCGCCTTCAATCTCACTGTTCCTCATCTTCTTCCAGATCCTGAAACTGTTGCTTATCAAGTTCAGAGGGCTGTGAACGATTCCTTTTCCCGGAGGCAAATGCTGTCCGTTAATTCGAAAGATCAATCCAGTTCCTGTCAAACTGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCGAACTGGCAAGCCAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGTCGAGACGCCATGGGAGGGAAGGGAGGTCAGATCTATGTTGTTACAGATTCCTCCGATTCCGACCCTGTGAACCCCCGCCCTGGAACTCTCCGCTACGCGGTGGTTCAAGACGAACCTCTCTGGATTGTTTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATCACCGGGGGCGGTTGCGTCACACTTCAATACATCTCGAATGTTATCATCCATAACATTAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGGTCGTCCCCCACGCACATCGGATACCGAGGAAAGTCCGATGGCGACGGAATCTCGATCTTCAGCTCGCGCAACATTTGGATCGATCATTGCTCACTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCTACCGGAATCACGATCTCCAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGATGGCTACTCGCCGGATTCGGCTATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTCGTTCAGAGGATGCCCCGGTGCCGGCGAGGATACTTTCATGTCGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGATCCGACTATCAACAGCCAAGGGAACCGGTATATTGCTCCGGGAAATCCCAACGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGACTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCGTCCGGGGAAGGACTGAGCAATATGTACGTTAAAGCGTCGAGTGTGGCGCCCAAATCCGCCGCTCTCGTCGATCGCCTGACTCTCAACGCCGGTGTCTTCGGCGGGGCCAGGGAGAATAGACAGAGCTACTCGTATCCTGGAGACGAAAGCTCCTCTAGTTCGACTTCGAGTGGCAGCGATGGTGGTGGTGACTATTTCGGGATGATATTCGGTGGTGGCGGGGGGGTGAACAGTGCACCACCACCACCATGTCTTTCAGTTGTTAACATGCTCATGCTAAGTCTGCTTACTGTTTTAGTTCTGTACACGAACAGCTATGATTCTGCTTTATTATCATTGTAG | 1488 | 52.42 | MFATTGILFFIWVLSSSLPPPAMATFAFNLTVPHLLPDPETVAYQVQRAVNDSFSRRQMLSVNSKDQSSSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNVIIHNINIHHCIPTGHTNIRSSPTHIGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYFHVVNNDFRSWEMYAIGGSGDPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDRLTLNAGVFGGARENRQSYSYPGDESSSSSTSSGSDGGGDYFGMIFGGGGGVNSAPPPPCLSVVNMLMLSLLTVLVLYTNSYDSALLSL | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2333478 | 2337782 | + | CmoCh15G005080.1 | Cmo15g00508 | 398016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00508 | 495 | PANTHER | PECTATE LYASE 18-RELATED | 5 | 434 | IPR045032 | GO:0030570 | |
Cmo15g00508 | 495 | MobiDBLite | consensus disorder prediction | 421 | 441 | - | - | |
Cmo15g00508 | 495 | Pfam | Pectate lyase | 157 | 328 | IPR002022 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 97 | 114 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 121 | 146 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 157 | 173 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 221 | 242 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 301 | 320 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 323 | 342 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 365 | 389 | IPR018082 | - | |
Cmo15g00508 | 495 | PRINTS | Pollen allergen Amb family signature | 394 | 417 | IPR018082 | - | |
Cmo15g00508 | 495 | MobiDBLite | consensus disorder prediction | 425 | 441 | - | - | |
Cmo15g00508 | 495 | Gene3D | - | 74 | 416 | IPR012334 | - | |
Cmo15g00508 | 495 | PANTHER | PECTATE LYASE | 5 | 434 | - | - | |
Cmo15g00508 | 495 | SUPERFAMILY | Pectin lyase-like | 75 | 414 | IPR011050 | - | |
Cmo15g00508 | 495 | SMART | amb_all | 149 | 346 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo15g00508 | Cmo-Chr15:2333478 | Cmo18g00915 | Cmo-Chr18:10329109 | 0 | dispersed | |
Cmo15g00508 | Cmo-Chr15:2333478 | Cmo03g01201 | Cmo-Chr3:9366781 | 0 | wgd | |
Cmo15g00508 | Cmo-Chr15:2333478 | Cmo04g02667 | Cmo-Chr4:19398147 | 1.23E-55 | wgd | |
Cmo15g00508 | Cmo-Chr15:2333478 | Cmo07g00925 | Cmo-Chr7:4447501 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00508 | K01728 | - | csv:101207535 | 849.351 |