Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00508 ATGTTTGCTACCACTGGCATTCTGTTCTTCATCTGGGTTTTGAGCTCATCTCTGCCTCCTCCTGCCATGGCTACTTTCGCCTTCAATCTCACTGTTCCTCATCTTCTTCCAGATCCTGAAACTGTTGCTTATCAAGTTCAGAGGGCTGTGAACGATTCCTTTTCCCGGAGGCAAATGCTGTCCGTTAATTCGAAAGATCAATCCAGTTCCTGTCAAACTGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCGAACTGGCAAGCCAATCGCCAACGACTCGCCGATTGCGGCATTGGATTCGGTCGAGACGCCATGGGAGGGAAGGGAGGTCAGATCTATGTTGTTACAGATTCCTCCGATTCCGACCCTGTGAACCCCCGCCCTGGAACTCTCCGCTACGCGGTGGTTCAAGACGAACCTCTCTGGATTGTTTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCATATCACCGGGGGCGGTTGCGTCACACTTCAATACATCTCGAATGTTATCATCCATAACATTAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGGTCGTCCCCCACGCACATCGGATACCGAGGAAAGTCCGATGGCGACGGAATCTCGATCTTCAGCTCGCGCAACATTTGGATCGATCATTGCTCACTCTCGTACTGTACCGATGGCTTAATCGACGCCATAATGGGATCTACCGGAATCACGATCTCCAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGATGGCTACTCGCCGGATTCGGCTATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTCGTTCAGAGGATGCCCCGGTGCCGGCGAGGATACTTTCATGTCGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGATCCGACTATCAACAGCCAAGGGAACCGGTATATTGCTCCGGGAAATCCCAACGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGACTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCGTCCGGGGAAGGACTGAGCAATATGTACGTTAAAGCGTCGAGTGTGGCGCCCAAATCCGCCGCTCTCGTCGATCGCCTGACTCTCAACGCCGGTGTCTTCGGCGGGGCCAGGGAGAATAGACAGAGCTACTCGTATCCTGGAGACGAAAGCTCCTCTAGTTCGACTTCGAGTGGCAGCGATGGTGGTGGTGACTATTTCGGGATGATATTCGGTGGTGGCGGGGGGGTGAACAGTGCACCACCACCACCATGTCTTTCAGTTGTTAACATGCTCATGCTAAGTCTGCTTACTGTTTTAGTTCTGTACACGAACAGCTATGATTCTGCTTTATTATCATTGTAG 1488 52.42 MFATTGILFFIWVLSSSLPPPAMATFAFNLTVPHLLPDPETVAYQVQRAVNDSFSRRQMLSVNSKDQSSSCQTGNPIDDCWRCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNVIIHNINIHHCIPTGHTNIRSSPTHIGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYFHVVNNDFRSWEMYAIGGSGDPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSVAPKSAALVDRLTLNAGVFGGARENRQSYSYPGDESSSSSTSSGSDGGGDYFGMIFGGGGGVNSAPPPPCLSVVNMLMLSLLTVLVLYTNSYDSALLSL 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2333478 2337782 + CmoCh15G005080.1 Cmo15g00508 398016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00508 495 PANTHER PECTATE LYASE 18-RELATED 5 434 IPR045032 GO:0030570
Cmo15g00508 495 MobiDBLite consensus disorder prediction 421 441 - -
Cmo15g00508 495 Pfam Pectate lyase 157 328 IPR002022 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cmo15g00508 495 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cmo15g00508 495 MobiDBLite consensus disorder prediction 425 441 - -
Cmo15g00508 495 Gene3D - 74 416 IPR012334 -
Cmo15g00508 495 PANTHER PECTATE LYASE 5 434 - -
Cmo15g00508 495 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cmo15g00508 495 SMART amb_all 149 346 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00508 Cmo-Chr15:2333478 Cmo18g00915 Cmo-Chr18:10329109 0 dispersed
Cmo15g00508 Cmo-Chr15:2333478 Cmo03g01201 Cmo-Chr3:9366781 0 wgd
Cmo15g00508 Cmo-Chr15:2333478 Cmo04g02667 Cmo-Chr4:19398147 1.23E-55 wgd
Cmo15g00508 Cmo-Chr15:2333478 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00508 K01728 - csv:101207535 849.351