Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00548 ATGGCGACAGAGCGACCGCTATTGATTATATCTCCAAGAACGCCAAACACTATCTCTCACGATTTGCAGAAACCAGAGCCGAACCGACTTGGATTGTTCTTCGCCATGGAAACTCCAAATCCTAATGAGAACTCAGCGAGTACTGAACTGGATCATCGCTCATTCTCGCGGCGAAGTCAATCGAAGTCCTCAATTCGTGAAGTCGGTTCCAGTGATTTTGGATCGAGGCCTGTTCGTCATGGGTCTCGAGGTGCCGATTCGGAAGCATTGAGCATATCACAGAAGGAAATCAGTGACGAAGATGCGAGGTTAATATACATCGATGATCCCGAAAAGACGAACCAAACGTTTGAATTCGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTCACTTTTCTGCCCAGGAATCTGTTTGAACAATTTCATAGAATTGCTTATATCTATTTCCTTGTTATTGCTGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGCACTGTCTCTATTTTGCCTTTAGCTTTTGTTCTGCTAGTTACTGCTGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGGTTAGCTTCAGTTTTAGTAGATGGTCAGTTTCAAATGAAGAAATGGAAGCATATAAGAGTTGGTGAGATCATTAAGATTAGTGCAAATGATACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCTACGGGGGTTGCATATTTGCAGACACTGAATTTGGATGGGGAATCGAATTTGAAAACGCGGTATGCGAAACAGGAGACGATGTCGAAAATGCCCGACATGGAGAAGATTATTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCAGGCTAATATGGAGATCGATGGGAAACGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGCGAGCTCAAGAATACGAGCTGGGCTGTTGGCGTTTCGGTTTATGCTGGCTGTGAGACGAAAGCCATGCTCAACAGTTCTGGAGCTCCATCGAAACGAAGCCGACTCGAGACTCGTATGAATGTAGAGATTGTGATCCTGTCTTTCTTTCTCATTGCTTTGTGTACTGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATTAGAAACAGGGAAGATTTGGACATTTTGCCTTTTTTCAGAGATAAGTACTTTTCAAAGGACCCACCTGAAACTTATAATTACTATGGATGGGGATTGGAGGCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATTATGATCCCCATTTCATTATACATTTCAATGGAGCTTGTTCGTGTCGGTCAGGCTTATTTTATGATTCAAGACACACAAATGTATGATGAAACATCGAATTCGAGATTCCAATGCCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACGGGTACCCTTACTGAGAATAAGATGGAGTTTCGATGTGCAAGCATCTGGGGAGTCGATTATGGAGGTGAAAGTACTGATACGCTCGACGAGCAGATCGGATACTCCGTTCGAGTGAATGGAAAGGTTTTGAGACCAAAATTGATGGTGAAAACTGATCCTGAGCTTCTACAGTTATCGAAAAGTGGAAAGTGCACTAAGAATGGAAGATATATTCATGATTTCTTCCTTGCATTAGCTGCTTGCAATACCATTGTTCCTCTCATTACCAAAACTTCTGATCCTTCGGTGCAATTGATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCAGCAGCATATGGTTTTATGCTAATCGAACGAACTTCTGGCCATATAGTTATTGATATACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTCGATAGCGACAGGAAGCGGATGTCGGTGATATTGGGGTGCCCAGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAATTCCATGTTCAAGGTGGCATGTGAAAACCTGAACATGGATATCATTCAGGTGACTAAAGCTCATCTGTATTCATACTCATCAAAGGGTCTCAGAACACTGGTTATTGGGATGAAAGAACTCAGTTCCTTTGACTTTGATAAATGGCACTCGCTGTTTGAGGAAGCAAGTACCGCTTTGATTGGCAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCAACATAGAAAACAATCTCTTGATATTAGGTGCCTCAGGCATTGAAGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAACTGCAGGAATTAAAGTATGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCAATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAGTTATAATTAACGACAACTCGGTAGAATCGTGCAAAAGGAGGTTAGAAGATGCAATAATCATGTCGAAGAAGCTTGCTGCTACCTCAGGCGTTGCACTGGATAATGAAAGAAGTACTGAAGTTGTAAGGACTTCTGTTGCTTTGATCATTGATGGCAGCAGCCTCGTTCATATTCTCGACGGTAAACTCGAAGAACAGCTTTTCCAACTCGCTTGTAACTGTTCGGTGGTGTTATGTTGTCGAGTCGCCCCATTGCAAAAGGCTGGAATTGTTGCTCTTGTCAAGAGAAGGACTTCTGATATGACACTTGCCATTGGCGATGGCGCAAATGACGTCTCCATGATCCAAAAGGCAGATGTGGGCGTCGGCATCAGTGGTCTAGAGGGTCGACAAGCTGTCATGGCGTCGGATTTTGCCATGGGGCAATTTCGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACAACTTCTACAGAAATGCAGTATTTGTGCTTGTTCTGTTTTGGTACGTGCTCTTTACGGGTTACTCGTTGACGACGGCGATCAACCAATGGAGCAGTGTGCTGTACTCTATAATCTATACTTGTTTGCCCACTATTGTTGTTGGAATTCTTGACAAGGACCTGGGAAGAAGGACTCTTCTTATGTCCCCTCAACTATATGGGGCTGGCCATAGACAGGAGAGCTACAACTCTGGGTTGTTTTGGTTAACAATGGTTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATTCCCCTCTTTGCATTTTGGGCTACCCCCGTCGACATCTCGGGCCTTGGAGATCTCTGGCTACTCGCCACGGTCATCGTCGTCAACTTGCACTTGGCAATGGACGTGGTTCGATGGTATACTCTCACCCATGCTGTGATCTGGGGATCCACTCTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCAATATTGTCACTTCCCGGTTTCTGGGCGATATATCACGTGGCGGGCACGGCCTCGTTTTGGCTTTGTTTGTTATCTATCGTCGTAGTAGCACTACTTCCCCGTCTTGTCGTAAAATACCTTTATCAATATTACTGGCCATGTGACATCCAGATAGCAAGAGAGGAGGATAAATTTGGAAGGACAAGCGAGGTGGGAGCTGTACAAACAGAGATGGTGCCAGTTCTCAGCAATCCTTCACAACTTTGA 3633 43.38 MATERPLLIISPRTPNTISHDLQKPEPNRLGLFFAMETPNPNENSASTELDHRSFSRRSQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLIYIDDPEKTNQTFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRTVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVDGQFQMKKWKHIRVGEIIKISANDTIPCDMVLLSTSDSTGVAYLQTLNLDGESNLKTRYAKQETMSKMPDMEKIIGLIKCEKPNRNIYGFQANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVSVYAGCETKAMLNSSGAPSKRSRLETRMNVEIVILSFFLIALCTVVCVLAAVWFIRNREDLDILPFFRDKYFSKDPPETYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIQDTQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGESTDTLDEQIGYSVRVNGKVLRPKLMVKTDPELLQLSKSGKCTKNGRYIHDFFLALAACNTIVPLITKTSDPSVQLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMFKVACENLNMDIIQVTKAHLYSYSSKGLRTLVIGMKELSSFDFDKWHSLFEEASTALIGRAAKLRKVASNIENNLLILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQVIINDNSVESCKRRLEDAIIMSKKLAATSGVALDNERSTEVVRTSVALIIDGSSLVHILDGKLEEQLFQLACNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLMSPQLYGAGHRQESYNSGLFWLTMVDTVWQSIAIFFIPLFAFWATPVDISGLGDLWLLATVIVVNLHLAMDVVRWYTLTHAVIWGSTLATVICVIVLDSILSLPGFWAIYHVAGTASFWLCLLSIVVVALLPRLVVKYLYQYYWPCDIQIAREEDKFGRTSEVGAVQTEMVPVLSNPSQL 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2610755 2616844 - CmoCh15G005480.1 Cmo15g00548 398056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00548 1210 Pfam Phospholipid-translocating ATPase N-terminal 105 171 IPR032631 -
Cmo15g00548 1210 Gene3D - 592 729 IPR023299 GO:0000166
Cmo15g00548 1210 Gene3D - 180 346 - -
Cmo15g00548 1210 SUPERFAMILY Calcium ATPase, transduction domain A 202 343 IPR008250 -
Cmo15g00548 1210 PRINTS P-type cation-transporting ATPase superfamily signature 489 503 - -
Cmo15g00548 1210 PRINTS P-type cation-transporting ATPase superfamily signature 908 927 - -
Cmo15g00548 1210 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 495 762 IPR023299 GO:0000166
Cmo15g00548 1210 ProSitePatterns E1-E2 ATPases phosphorylation site. 491 497 IPR018303 -
Cmo15g00548 1210 CDD P-type_ATPase_APLT_Dnf-like 121 1068 - -
Cmo15g00548 1210 Pfam E1-E2 ATPase 204 447 - -
Cmo15g00548 1210 Pfam Cation transport ATPase (P-type) 597 673 - -
Cmo15g00548 1210 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 878 991 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00548 1210 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 421 510 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo15g00548 1210 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1175 IPR023298 -
Cmo15g00548 1210 MobiDBLite consensus disorder prediction 1 92 - -
Cmo15g00548 1210 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 42 1208 - -
Cmo15g00548 1210 SFLD C1.7: P-type atpase like 473 959 - -
Cmo15g00548 1210 SUPERFAMILY HAD-like 476 949 IPR036412 -
Cmo15g00548 1210 Gene3D - 745 948 IPR023214 -
Cmo15g00548 1210 Pfam Phospholipid-translocating P-type ATPase C-terminal 936 1175 IPR032630 -
Cmo15g00548 1210 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 42 1208 - -
Cmo15g00548 1210 SFLD p-type atpase 473 959 IPR044492 -
Cmo15g00548 1210 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 119 1183 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00303 Cmo-Chr3:4214054 Cmo15g00548 Cmo-Chr15:2610755 0 dispersed
Cmo07g01262 Cmo-Chr7:6898040 Cmo15g00548 Cmo-Chr15:2610755 0 dispersed
Cmo15g00548 Cmo-Chr15:2610755 Cmo18g00028 Cmo-Chr18:119077 0 dispersed
Cmo15g00548 Cmo-Chr15:2610755 Cmo04g02613 Cmo-Chr4:19053509 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00548 K14802 - csv:101212953 2175.59