Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00552 ATGGGGATTCAGACTATGGGGTCTCAGGCTGGAGGTGATCCGAATGGCAAACAATCACAGTTCCAGCCGTTGGTTCGTCAAAGCTCGCTCTATAATCTCACGTTGGATGAGGTCCAAAATCAGTTGGGAGATCTAGGAAAGCCGTTAGTCAGTATGAATCTCGACGAGCTTCTTAAGAATGTGTGGACTGCTGAGGCGAACCAAACGGTTGGTAAGGAGAATGAGGATAATACTGTCTTGGATAATCAAACGTCCCTACAACGTCAGGCTAGCCTTTCGTTGAATGGTGCTCTGAGTAAAAAGACTGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAAATAGTGAGGAGAAGAAGTCTCGTGAACAGCAACCGACGTTGGGAGAGATGACGTTGGAGGATTTTCTAGTGAAAGCAGGGGTGGTTGCTGAAACGTCGTCGAATAAAAAAGGAGCGGGTTCTGTTGTTGAAATTGATGCAAATATCACGCCGCAGTTTCAACAAACGCAGTGGATGCAGTACCCGCAACCTCCGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCGGGCCAGCCTATTCCCCAGCCGCTGCACGTGGGGGCTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGATGGCGTTACAAACTCCTTTAATGGGAACTTTATCGGACACACCGACATCTGGGAGAAAAAGAGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAAAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAACGAAAGGCTCCGGAAACGGAAGAAGTGTTTGTTTTGCATGTTCAGGAGCTGGAAAAGATGCTACCGTTGGCACCCTCACCGGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCGCCGTTCTAACTTGGACATCGACTCTGTCTTCCTCCTCCTCACACTCGTCGTAAAGAAGAAAGTGTACGTGGTCGGTTTGATAGTTCGTTTTTAA 1074 47.67 MGIQTMGSQAGGDPNGKQSQFQPLVRQSSLYNLTLDEVQNQLGDLGKPLVSMNLDELLKNVWTAEANQTVGKENEDNTVLDNQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSREQQPTLGEMTLEDFLVKAGVVAETSSNKKGAGSVVEIDANITPQFQQTQWMQYPQPPYQSQQAAMMGVYMSGQPIPQPLHVGAGAVMDVPYVDNQMALQTPLMGTLSDTPTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKKCLFCMFRSWKRCYRWHPHRSRSISFEEHRQRRSNLDIDSVFLLLTLVVKKKVYVVGLIVRF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2641308 2644380 + CmoCh15G005520.1 Cmo15g00552 398060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00552 357 PANTHER BZIP TRANSCRIPTION FACTOR 4 299 - -
Cmo15g00552 357 Pfam bZIP transcription factor 251 296 IPR004827 GO:0003700|GO:0006355
Cmo15g00552 357 MobiDBLite consensus disorder prediction 1 20 - -
Cmo15g00552 357 SMART brlzneu 247 304 IPR004827 GO:0003700|GO:0006355
Cmo15g00552 357 Gene3D - 249 301 - -
Cmo15g00552 357 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 299 IPR043452 GO:0003700|GO:0045893
Cmo15g00552 357 SUPERFAMILY Leucine zipper domain 251 299 IPR046347 GO:0003700|GO:0006355
Cmo15g00552 357 CDD bZIP_plant_BZIP46 251 304 - -
Cmo15g00552 357 Coils Coil 267 301 - -
Cmo15g00552 357 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 254 269 IPR004827 GO:0003700|GO:0006355
Cmo15g00552 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 249 294 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00642 Cmo-Chr9:3211492 Cmo15g00552 Cmo-Chr15:2641308 5.59E-20 dispersed
Cmo11g01370 Cmo-Chr11:9574499 Cmo15g00552 Cmo-Chr15:2641308 1.44E-43 dispersed
Cmo11g01534 Cmo-Chr11:10953799 Cmo15g00552 Cmo-Chr15:2641308 1.35E-28 dispersed
Cmo15g00552 Cmo-Chr15:2641308 Cmo20g00183 Cmo-Chr20:907674 1.72E-33 dispersed
Cmo10g01043 Cmo-Chr10:5495297 Cmo15g00552 Cmo-Chr15:2641308 2.21E-70 transposed
Cmo16g01299 Cmo-Chr16:9248331 Cmo15g00552 Cmo-Chr15:2641308 1.37E-18 transposed
Cmo15g00552 Cmo-Chr15:2641308 Cmo04g02610 Cmo-Chr4:19022595 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11146 PF00170 bZIP_1 7.50E-14 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00552 K14432 - csv:101213915 511.531