Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00557 ATGATGAACAACATGGGAATCTTTGAAGATATTAGCTTTTGCCAAAACCTTGAATATTTTTCAGCTCCTCCTGGGGAACAGGAGACAGCTCGGGAGCATGAAGCTGAGGCTACTTTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAGGAACAAAGCAAAGAGAAGGAAAGCGCTGACAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATTGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGTAAGGCTCAAGGATTTGTGTATGGGATCATTCCTGAGAAAGGAAAACCAGTAAGCGGAGCGTCCGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGATCGAAACGGTCCTGCAGCTATTGCCAAATATCAGGCTGAACATGCAATTCCTGGGAACAATGATGACTGCAATACAGTGACATCCACTCCTCATACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGCGATCCACCCCAAAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCACCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAATTGGGACTACCTAACGATCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTTACTGCTGTGATTAAGCATATGTCACCTGATATTGCGAAGATTCGCAAGCTCGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCCACATGGTTGGCAATTGTGAACCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCTGATAAATGCCCGCCTGTGCCGATATGTGGGAGCGGATCTCTTTTGATCAGTGATTCTAGTGATTACGATGTTGAAGGAGTAGAAGATGAACCAAATGTCCAAGCAGGGGAAAGCAAACCCCACGATCTCAATTTCTTTAACATGGGTGCCCCTGGACCTAGAGAGAGGCTTGTGATGCCCCCTGTGGGAACTCAGATTAAGGAAGAATTCATGGAGAACAATTCGGACCTTAGTCGAAAGAGGAAGCAGCTGACAGATGAGTCGATTACAATAATGAATCAGAAGCTATATACTTGCGAGTATTCTCAATGCCCATATAACAGTCAGCGCCTCGGGTTTTTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGCATGATTCTTCACATATATTTAGCATGCCAAGCTTTCAAACTAATGGTGACAAATCATCATCCCCAGTTCCTCCATCGTTAAACCATTCTAAGCCACTGCCTATTCGGTCAATGAACCCGACTCCACCCTTCAGGGTATCAGGACTCGGACTTCCAGAAGACGACCAGAAAATGATTTCGGACCTTCTGAGTTGCTATGATTCTAACCTTCAACAGGACAAGAACACATTGAATCCCGGTAATGTCGATGCTAGAGGTGACCACAATCCCAACCAACAGCTGCCAAAATTCCAACCCCAAGTCGACATTAACATGTATGGCCAAGCAGCGATCGTGGGAAATAACATGCCAATACAGCACCCCGACATTTCTTCCACAAAACTTCCATTCGAAGAATACAAGGCGGCAGCATTTGATTCTCCGTTCAGCATGTATCCCAACGATAACATCCCAGACTTAAGATTTGGTTCTCCTTTTAACCTTGCATCAATTGATTATGCAGCAGCAGACACACCATTGCCCAAGCAAGACACACCCTTGTGGTACCTTTGA 1857 46.1 MMNNMGIFEDISFCQNLEYFSAPPGEQETAREHEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKESADNSKQRQSQEQARRKKMSRAQDCILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHAIPGNNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPNDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVPICGSGSLLISDSSDYDVEGVEDEPNVQAGESKPHDLNFFNMGAPGPRERLVMPPVGTQIKEEFMENNSDLSRKRKQLTDESITIMNQKLYTCEYSQCPYNSQRLGFFDRTSRNNHQLNCPFRHDSSHIFSMPSFQTNGDKSSSPVPPSLNHSKPLPIRSMNPTPPFRVSGLGLPEDDQKMISDLLSCYDSNLQQDKNTLNPGNVDARGDHNPNQQLPKFQPQVDINMYGQAAIVGNNMPIQHPDISSTKLPFEEYKAAAFDSPFSMYPNDNIPDLRFGSPFNLASIDYAAADTPLPKQDTPLWYL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2663581 2665437 + CmoCh15G005570.1 Cmo15g00557 398065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00557 618 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Cmo15g00557 618 Coils Coil 373 393 - -
Cmo15g00557 618 MobiDBLite consensus disorder prediction 443 461 - -
Cmo15g00557 618 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 69 92 - -
Cmo15g00557 618 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 24 46 - -
Cmo15g00557 618 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 617 - -
Cmo15g00557 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 617 IPR006957 GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 443 476 - -
Cmo15g00557 618 Coils Coil 36 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00557 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 1081.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01026 Cmo-Chr10:5388347 Cmo15g00557 Cmo-Chr15:2663581 0 dispersed
Cmo11g00819 Cmo-Chr11:4064782 Cmo15g00557 Cmo-Chr15:2663581 0 dispersed
Cmo15g00557 Cmo-Chr15:2663581 Cmo16g00750 Cmo-Chr16:3765531 1.34E-105 dispersed
Cmo11g00844 Cmo-Chr11:4288727 Cmo15g00557 Cmo-Chr15:2663581 3.62E-131 transposed
Cmo15g00557 Cmo-Chr15:2663581 Cmo04g02607 Cmo-Chr4:19007185 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g00819 . 2 601 EIL Transcription Factor Family AT2G27050 62.4 1.4e-197 686.8
Cmo10g01026 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 6.2e-190 661.4
Cmo15g00557 . 1 508 EIL Transcription Factor Family AT2G27050 59.7 7.9e-161 564.7
Cmo04g02607 . 68 584 EIL Transcription Factor Family AT2G27050 58.3 8.7e-160 561.2
Cmo11g00844 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 8.6e-91 332.0
Cmo11g00844 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.5e-73 273.9
Cmo11g00844 . 58 573 EIL Transcription Factor Family AT1G73730 53.9 3.2e-135 479.6
Cmo11g00819 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 3.4e-105 379.8
Cmo10g01026 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.4e-104 375.2
Cmo04g02607 . 100 363 EIL Transcription Factor Family AT1G73730 67.7 5.7e-100 362.5
Cmo15g00557 . 40 335 EIL Transcription Factor Family AT1G73730 60.4 2.2e-99 360.5
Cmo16g00750 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.6e-76 283.9
Cmo04g00869 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 7.0e-74 275.8
Cmo10g01026 . 3 619 EIL Transcription Factor Family AT3G20770 62.3 1.0e-206 717.2
Cmo11g00819 . 3 601 EIL Transcription Factor Family AT3G20770 61.2 2.5e-205 712.6
Cmo04g02607 . 67 670 EIL Transcription Factor Family AT3G20770 51.4 4.5e-162 568.9
Cmo15g00557 . 7 512 EIL Transcription Factor Family AT3G20770 59.4 3.6e-159 559.3
Cmo11g00844 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.4e-92 335.9
Cmo11g00844 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cmo16g00750 . 19 349 EIL Transcription Factor Family AT5G10120 59.6 1.0e-105 381.3
Cmo04g00869 . 18 355 EIL Transcription Factor Family AT5G10120 57.6 5.1e-102 369.0
Cmo11g00844 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11147 PF04873 EIN3 2.80E-131 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00557 Cmo_Chr15 FPKM 19.701094 20.771921 30.176098 30.789978 24.008383 24.643141 24.473158 27.603584 31.998184 31.542763