Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00557 ATGATGAACAACATGGGAATCTTTGAAGATATTAGCTTTTGCCAAAACCTTGAATATTTTTCAGCTCCTCCTGGGGAACAGGAGACAGCTCGGGAGCATGAAGCTGAGGCTACTTTGGAGGAAGATTACAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGAGACCGAATGCTTTTGAGGCGACTCAAGGAACAAAGCAAAGAGAAGGAAAGCGCTGACAATTCAAAGCAGCGTCAATCCCAGGAGCAAGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATTGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGTAAGGCTCAAGGATTTGTGTATGGGATCATTCCTGAGAAAGGAAAACCAGTAAGCGGAGCGTCCGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGATCGAAACGGTCCTGCAGCTATTGCCAAATATCAGGCTGAACATGCAATTCCTGGGAACAATGATGACTGCAATACAGTGACATCCACTCCTCATACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCAGCTCTGATGCAGCACTGCGATCCACCCCAAAGGCGTTTTCCATTGGAGAAGGGAGTTTCCCCACCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAATTGGGACTACCTAACGATCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTTACTGCTGTGATTAAGCATATGTCACCTGATATTGCGAAGATTCGCAAGCTCGTTCGTCAGTCTAAATGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCCACATGGTTGGCAATTGTGAACCAGGAAGAAGCTTTGGCTAGGAAATTGTATCCTGATAAATGCCCGCCTGTGCCGATATGTGGGAGCGGATCTCTTTTGATCAGTGATTCTAGTGATTACGATGTTGAAGGAGTAGAAGATGAACCAAATGTCCAAGCAGGGGAAAGCAAACCCCACGATCTCAATTTCTTTAACATGGGTGCCCCTGGACCTAGAGAGAGGCTTGTGATGCCCCCTGTGGGAACTCAGATTAAGGAAGAATTCATGGAGAACAATTCGGACCTTAGTCGAAAGAGGAAGCAGCTGACAGATGAGTCGATTACAATAATGAATCAGAAGCTATATACTTGCGAGTATTCTCAATGCCCATATAACAGTCAGCGCCTCGGGTTTTTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGCATGATTCTTCACATATATTTAGCATGCCAAGCTTTCAAACTAATGGTGACAAATCATCATCCCCAGTTCCTCCATCGTTAAACCATTCTAAGCCACTGCCTATTCGGTCAATGAACCCGACTCCACCCTTCAGGGTATCAGGACTCGGACTTCCAGAAGACGACCAGAAAATGATTTCGGACCTTCTGAGTTGCTATGATTCTAACCTTCAACAGGACAAGAACACATTGAATCCCGGTAATGTCGATGCTAGAGGTGACCACAATCCCAACCAACAGCTGCCAAAATTCCAACCCCAAGTCGACATTAACATGTATGGCCAAGCAGCGATCGTGGGAAATAACATGCCAATACAGCACCCCGACATTTCTTCCACAAAACTTCCATTCGAAGAATACAAGGCGGCAGCATTTGATTCTCCGTTCAGCATGTATCCCAACGATAACATCCCAGACTTAAGATTTGGTTCTCCTTTTAACCTTGCATCAATTGATTATGCAGCAGCAGACACACCATTGCCCAAGCAAGACACACCCTTGTGGTACCTTTGA 1857 46.1 MMNNMGIFEDISFCQNLEYFSAPPGEQETAREHEAEATLEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKESADNSKQRQSQEQARRKKMSRAQDCILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQAEHAIPGNNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPNDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVPICGSGSLLISDSSDYDVEGVEDEPNVQAGESKPHDLNFFNMGAPGPRERLVMPPVGTQIKEEFMENNSDLSRKRKQLTDESITIMNQKLYTCEYSQCPYNSQRLGFFDRTSRNNHQLNCPFRHDSSHIFSMPSFQTNGDKSSSPVPPSLNHSKPLPIRSMNPTPPFRVSGLGLPEDDQKMISDLLSCYDSNLQQDKNTLNPGNVDARGDHNPNQQLPKFQPQVDINMYGQAAIVGNNMPIQHPDISSTKLPFEEYKAAAFDSPFSMYPNDNIPDLRFGSPFNLASIDYAAADTPLPKQDTPLWYL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2663581 2665437 + CmoCh15G005570.1 Cmo15g00557 398065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00557 618 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Cmo15g00557 618 Coils Coil 373 393 - -
Cmo15g00557 618 MobiDBLite consensus disorder prediction 443 461 - -
Cmo15g00557 618 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 69 92 - -
Cmo15g00557 618 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 24 46 - -
Cmo15g00557 618 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Cmo15g00557 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 617 - -
Cmo15g00557 618 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 617 IPR006957 GO:0005634
Cmo15g00557 618 MobiDBLite consensus disorder prediction 443 476 - -
Cmo15g00557 618 Coils Coil 36 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01026 Cmo-Chr10:5388347 Cmo15g00557 Cmo-Chr15:2663581 0 dispersed
Cmo11g00819 Cmo-Chr11:4064782 Cmo15g00557 Cmo-Chr15:2663581 0 dispersed
Cmo15g00557 Cmo-Chr15:2663581 Cmo16g00750 Cmo-Chr16:3765531 1.34E-105 dispersed
Cmo11g00844 Cmo-Chr11:4288727 Cmo15g00557 Cmo-Chr15:2663581 3.62E-131 transposed
Cmo15g00557 Cmo-Chr15:2663581 Cmo04g02607 Cmo-Chr4:19007185 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11147 PF04873 EIN3 2.80E-131 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00557 K14514 - csv:101214396 1081.24