Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00558 ATGCCATGCCCTAAAGAAGCAATGAAGAAATTCCCACTTGTGGCTCAAACTTCTCTACTTTTCTGGATTTTCTTCATCATACTAATGATTGGAAGACGTCTTGATGCATCGACTCACTGGGATCACATGAGCTTTAATGCAGAAGATACTCACAGACCAGTAGGCAGCTCAACGCACCACGAGGAAAAAACTGAAGCACTAGGTATGGAGTTATACCCGACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCATGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGCTGCAGAGTCCTGTCCCACTGTCTACAGGTGCATGTGTAAAGGGAAATATTATCACGTACCTTCCAATTGA 375 45.6 MPCPKEAMKKFPLVAQTSLLFWIFFIILMIGRRLDASTHWDHMSFNAEDTHRPVGSSTHHEEKTEALGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSAAESCPTVYRCMCKGKYYHVPSN 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2665527 2669676 + CmoCh15G005580.1 Cmo15g00558 398066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00558 124 Pfam Epidermal patterning factor proteins 74 121 - -
Cmo15g00558 124 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 7 15 123 - -
Cmo15g00558 124 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 15 123 IPR039455 GO:0010374
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00558 K20729 EPF1_2; protein EPIDERMAL PATTERNING FACTOR 1/2 - csv:101215276 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00112 Cmo-Chr2:591852 Cmo15g00558 Cmo-Chr15:2665527 7.08E-15 dispersed
Cmo11g01947 Cmo-Chr11:13436145 Cmo15g00558 Cmo-Chr15:2665527 2.05E-17 dispersed
Cmo15g00558 Cmo-Chr15:2665527 Cmo19g01014 Cmo-Chr19:8954156 1.99E-16 dispersed
Cmo15g00558 Cmo-Chr15:2665527 Cmo04g02601 Cmo-Chr4:18992271 6.77E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1305 . . . . . . . . . Cmo15g00558 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014165 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 2 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00558 Cmo_Chr15 FPKM 4.099608 3.738445 5.579342 5.547095 5.237471 5.025969 4.956944 2.42065 2.40079 2.316314