Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00563 ATGGAGCAAGATGAAGTAACTTCCTGCAGTTTGCCTCTTTCGACCGAGACTCGAGCATTGCTTCGTTTCAAAGAGAATCTCAATGATCCGATGGGGTTTCTTGATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACATGTGATCGGGTTTCCGGGAAAGTCGTAGAGATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCATCTATTTCTGTTCTGCAAAGTCTCACAATACTTTCGTTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAACTGATCAACTGTAGCAATATTAGAGTATTGAATCTCACTGACAATGAAATGGTTAGGAGGATTCCTGATCTTTCTCAGCTGAGAAAATTGGAGGTTCTAGATCTATCAATCAACTTCTTTTCTGGCCCATTCCCAATCTGGGTTGGAAATTTAACTGGATTGAATTCTCTGGGGCTTGGTGAAAATGAGTTTGAGGCTGGTGACATACCAGAATCAATAGGAAATTTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACAATTGAGAGGGGAAATACCAGTCTCTCTCTTTGAATTGAAGGCCTTAGAGACAATGGATCTTTCAAGGAACAAGCTTTCTGGTAACCTCTCCAAGTCAATATCCAAGTTGCAGAATCTGAACAAGCTTGAGCTTTTTGAAAACAAATTAACTGGAGAAATTCCACCAGAGATTTCAAACCTTACCCTTCTGCAAGAAATTGATATATCTGCAAATAGTTTTGATGGGCAGTTGCCGGACGAGGTTCGGAACCTCAGGAATTTGGTGGTTTTTCAGTCATATGAAAACAACTTCTCAGGTAAGTTCCCTGAAGGGTTCGAAAATATGCAAAACCTTATTGCAATTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGCGAACTTCGGCAGATTTGCTCCGCTCCTCAGCATCGACATATCTGAGAATCAATTTTCAGGGAGCTTCCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTCTGGATAATAAATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGAGTGCAAATCACTGCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATTATTGATTTTAGTGACAATGAGTTTACTGGAGTTATAAACCCAAACATTGGTCTATCGACCAGCTTGGGCCAATTGATATTGCAAAACAATAAGTTATCAGGTCAAATCCCAGAATACTTGGAGAAAATGGAACTAAGCTCGATAGATTTGTCGGGAAATCAGCTGTTTGGAAGAGTTCCATCCAGTCTTCTAGCAATGAGTGGAGACGAAGCCTTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGTCTGGTTACTTGTACTGGAAAGCATAGGCAGAAAGGGATGCTTGTGGATAAACTTGTATTTTTCAGTATGATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTTTAGTTACTTGAAGCACAGTGAGACTCGCCTGGAGACCAATCAGGAACAGGACCAACAAGGAGCTCCAAAATGGAAAATTGCATCATTCCATCCAGTGGAAATTGATGCAGATGAAATATGCAGCTTTGAAGAAGACAATTTGATAGGGAGAGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAACAATGGCGGTACAGTGGCTGTTAAGCAGCTCCGGAAAGGAGATGAAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAAAAACATCTTGAAGCTCTATGCCTGCTTAATGAGGGAAGGATCTAGTTATCTAGTTTTTGAATATATGACTAACGGAAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGTCTGGATTGAACTGGAATCAGAGGTACAGGATTGCATTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAATCAACCAACATACTTCTTGATGGAGATTATGAACCAAAAATTGCTGATTTTGGAGTTGCAAGAGTTGCAGATCAGTTCCTAATTGTTTCTGAGCACAGCACTTTTGCTGGCACTCACGGTTATCTTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAAAATGAATATGGAGAAGAAAAAGATATTGTCTACTGGGTCTCAACACACCTCGATGGCCGTGACAATGTCCTCAAGCTTCTGGACATCAAAGTTGAATCTGAAGTCGTCCAAAATGACATGATAAAAGTCCTGAAGATTGCTGTACTTTGCACAAGAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTGTTAGACGCTGATCCCTACTCTTCTTCAACGTCCCTGACCAACAATTCAAATAAAAACAGTAAGGATTTTGTTTAG 2598 40.65 MEQDEVTSCSLPLSTETRALLRFKENLNDPMGFLDSWIDSESPCGFSGITCDRVSGKVVEISLENKSLSGEISPSISVLQSLTILSLASNHISGELPYQLINCSNIRVLNLTDNEMVRRIPDLSQLRKLEVLDLSINFFSGPFPIWVGNLTGLNSLGLGENEFEAGDIPESIGNLKNLTWLYLANAQLRGEIPVSLFELKALETMDLSRNKLSGNLSKSISKLQNLNKLELFENKLTGEIPPEISNLTLLQEIDISANSFDGQLPDEVRNLRNLVVFQSYENNFSGKFPEGFENMQNLIAISIYRNNFSGEFPANFGRFAPLLSIDISENQFSGSFPKFLCENRKLQFLLALDNKFSGELPLSLAECKSLQRFRINNNQMSGRIPDGVWALPNAKIIDFSDNEFTGVINPNIGLSTSLGQLILQNNKLSGQIPEYLEKMELSSIDLSGNQLFGRVPSSLLAMSGDEAFLDNKELCVDENYRERINTSLVTCTGKHRQKGMLVDKLVFFSMIVSILVCVLAGLVLVSFSYLKHSETRLETNQEQDQQGAPKWKIASFHPVEIDADEICSFEEDNLIGRGGTGKVYRLDLKNNGGTVAVKQLRKGDEMKVLAAEMEILGKIRHKNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQSGLNWNQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVARVADQFLIVSEHSTFAGTHGYLAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIENEYGEEKDIVYWVSTHLDGRDNVLKLLDIKVESEVVQNDMIKVLKIAVLCTRKLPSLRPSMREVVKMLLDADPYSSSTSLTNNSNKNSKDFV 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2676626 2681422 - CmoCh15G005630.1 Cmo15g00563 398071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00563 865 SUPERFAMILY Protein kinase-like (PK-like) 566 841 IPR011009 -
Cmo15g00563 865 SMART serkin_6 569 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00563 865 Pfam Protein kinase domain 569 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00563 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672|GO:0006468
Cmo15g00563 865 ProSiteProfiles Protein kinase domain profile. 569 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00563 865 Gene3D Ribonuclease Inhibitor 221 492 IPR032675 -
Cmo15g00563 865 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 425 853 - -
Cmo15g00563 865 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR2 8 438 - -
Cmo15g00563 865 Gene3D Phosphorylase Kinase; domain 1 538 643 - -
Cmo15g00563 865 Gene3D Transferase(Phosphotransferase) domain 1 644 863 - -
Cmo15g00563 865 SUPERFAMILY L domain-like 192 462 - -
Cmo15g00563 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 425 853 - -
Cmo15g00563 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 438 - -
Cmo15g00563 865 Gene3D Ribonuclease Inhibitor 166 220 IPR032675 -
Cmo15g00563 865 SUPERFAMILY L domain-like 42 276 - -
Cmo15g00563 865 Pfam Leucine rich repeat N-terminal domain 15 52 IPR013210 -
Cmo15g00563 865 ProSitePatterns Protein kinases ATP-binding region signature. 575 598 IPR017441 GO:0005524
Cmo15g00563 865 Gene3D Ribonuclease Inhibitor 12 165 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00563 Cmo-Chr15:2676626 Cmo05g00597 Cmo-Chr5:2970194 0 dispersed
Cmo15g00563 Cmo-Chr15:2676626 Cmo04g02597 Cmo-Chr4:18978819 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74910 PF00069 Pkinase 3.30E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00563 - - mcha:111006081 973.77