Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00565 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCATATTCATGCTCGCTTTCGTGTTCTTCATCCTTTTCTTCACTGGCTTTCTCGAATTTCCGCCGGCATCCACTTCGATCGTACCGGCCACCGATGATCTGAATCTATCCGCAGCCGAGTTCGCTTTCGATCCTTTCTCTGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTTGGTTGCGATCGATTTCGGGAGAAAATTAGCGGCGGTTTGGGAAATGGATCTTTGTCGACTTCGCTGCAGCTTGTCGGCGGCGAGTCTAATTCGGAATGTGGAGGGCTGAAACTGAATCATGTCTCTGTTTTGGTGAAAGGATGGACATGGATCCCTGATAATTTAGACAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCCGACGCCTTGTTCTTCGAGACCAGTACGCCTCCGCGTCAGAGGCGCAGGGGTGATCCTCTCCGTATTTATATGGATCTCGAGGCTGGTAGGAAGCGCTCAGGTTTTGAGGATCTATTCGTTAGTTATCATGCGGAAGACGATGTTCAGTCAACCTATGCAGGAGCACTCTTTCACAATGGTCGAAACTATCACGTATCTTCTTCTAAAAACAATGATACGCTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAACGAAATCAGCTTGCTAGGAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGGCTTGACATGGCCCTTGATATGTACCCTGAATGTGCAAACGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCATTACAAATTCGTTCTAGCAATCGAAAACACGATGACCGAGAGTTACGTGACGGAGAAGCTATTTTATGCGCTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCTCCAAATGTCTGGGACTTTGTCCCTCCACATTCCATAATTGATGGGTCTAAATTCAGCTCGTTGGAAGAGTTAGCTTCTTATGTAAAACGACTTGCTGATGATCCGGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCGTTGGGAAACTATAGGAGGACCCGAGCTGCAAGCCTCGACACGCTGCCGTGCCGGGTATGTAATGCTGTGAGCAGAAGGGGTGGTAGAAATGGATGA 1221 47.83 MLLKPFNTVAVIFMLAFVFFILFFTGFLEFPPASTSIVPATDDLNLSAAEFAFDPFSDLITAFKKWDSQVGCDRFREKISGGLGNGSLSTSLQLVGGESNSECGGLKLNHVSVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALDMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCNAVSRRGGRNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2693178 2696506 + CmoCh15G005650.1 Cmo15g00565 398073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00565 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
Cmo15g00565 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cmo15g00565 406 Gene3D - 171 379 IPR038577 -
Cmo15g00565 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cmo15g00565 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 99 400 - -
Cmo15g00565 406 PIRSF FucT_plant 1 406 IPR017177 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00565 K14412 FUT13, FucTC; alpha-1,4-fucosyltransferase [EC:2.4.1.65] - csv:101216230 764.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00565 Cmo-Chr15:2693178 Cmo16g00380 Cmo-Chr16:1749715 7.55E-15 dispersed
Cmo15g00565 Cmo-Chr15:2693178 Cmo04g02596 Cmo-Chr4:18971173 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 36 552 Xyloglucan Fucosyltransferase1 AT2G03220 62.8 1.4e-191 666.8
Cmo01g00838 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 1.6e-187 653.3
Cmo13g01199 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.7e-184 643.3
Cmo16g00514 . 108 599 Xyloglucan Fucosyltransferase1 AT2G03220 52.8 1.0e-149 527.7
Cmo04g01754 . 6 552 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 3.6e-174 609.0
Cmo13g01199 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.9 1.3e-168 590.5
Cmo01g00838 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 1.8e-165 580.1
Cmo04g01754 . 92 551 Xyloglucan Fucosyltransferase1 AT2G15390 53.1 1.2e-142 504.2
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.2e-142 504.2
Cmo01g00838 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 4.9e-141 498.8
Cmo13g01199 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 51.0 5.4e-140 495.4
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 1.6e-139 493.8
Cmo13g01199 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 6.8e-151 531.6
Cmo04g01754 . 100 551 Xyloglucan Fucosyltransferase1 AT1G14080 55.5 2.2e-149 526.6
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 2.9e-149 526.2
Cmo13g01199 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.8 2.0e-160 563.1
Cmo04g01754 . 81 542 Xyloglucan Fucosyltransferase1 AT1G14100 58.0 2.9e-159 559.3
Cmo01g00838 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.5 6.1e-157 551.6
Cmo13g01199 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 52.1 3.9e-134 475.7
Cmo04g01754 . 81 541 Xyloglucan Fucosyltransferase1 AT1G14110 52.6 9.7e-133 471.1
Cmo04g01754 . 101 551 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 9.8e-147 517.7
Cmo13g01199 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.7 2.8e-146 516.2
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT3G19280 62.7 1.0e-185 647.1
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 5.7e-184 641.3
Cmo04g00523 . 48 186 Xyloglucan Fucosyltransferase1 AT3G19280 57.6 3.1e-36 150.6
Cmo19g00620 . 1 524 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 5.6e-187 651.4
Cmo16g00380 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 62.7 5.5e-182 634.8
Cmo15g00565 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.4 6.6e-167 584.3
Cmo04g02596 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 68.3 1.7e-162 569.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010578 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00565 Cmo_Chr15 FPKM 5.237136 6.296899 8.269438 7.454124 5.962419 7.324613 6.675646 10.589934 7.785814 7.351967