Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00565 ATGCTCTTGAAGCCCTTCAACACCGTTGCCGTCATATTCATGCTCGCTTTCGTGTTCTTCATCCTTTTCTTCACTGGCTTTCTCGAATTTCCGCCGGCATCCACTTCGATCGTACCGGCCACCGATGATCTGAATCTATCCGCAGCCGAGTTCGCTTTCGATCCTTTCTCTGATTTGATCACCGCCTTTAAGAAATGGGACTCTCAGGTTGGTTGCGATCGATTTCGGGAGAAAATTAGCGGCGGTTTGGGAAATGGATCTTTGTCGACTTCGCTGCAGCTTGTCGGCGGCGAGTCTAATTCGGAATGTGGAGGGCTGAAACTGAATCATGTCTCTGTTTTGGTGAAAGGATGGACATGGATCCCTGATAATTTAGACAATTTGTATTCGTGTTCTTGTGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCCGACGCCTTGTTCTTCGAGACCAGTACGCCTCCGCGTCAGAGGCGCAGGGGTGATCCTCTCCGTATTTATATGGATCTCGAGGCTGGTAGGAAGCGCTCAGGTTTTGAGGATCTATTCGTTAGTTATCATGCGGAAGACGATGTTCAGTCAACCTATGCAGGAGCACTCTTTCACAATGGTCGAAACTATCACGTATCTTCTTCTAAAAACAATGATACGCTCGTTTATTGGTCGTCGTCTCGTTGTCTTCCCCAACGAAATCAGCTTGCTAGGAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGGCTTGACATGGCCCTTGATATGTACCCTGAATGTGCAAACGATGCCAGTGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCATTACAAATTCGTTCTAGCAATCGAAAACACGATGACCGAGAGTTACGTGACGGAGAAGCTATTTTATGCGCTAGACTCCGGTTCGGTTCCGATCTATTTTGGTGCTCCAAATGTCTGGGACTTTGTCCCTCCACATTCCATAATTGATGGGTCTAAATTCAGCTCGTTGGAAGAGTTAGCTTCTTATGTAAAACGACTTGCTGATGATCCGGTAGCTTATGCTGAGTACCATGCTTGGAGACGATGCCGTGCGTTGGGAAACTATAGGAGGACCCGAGCTGCAAGCCTCGACACGCTGCCGTGCCGGGTATGTAATGCTGTGAGCAGAAGGGGTGGTAGAAATGGATGA 1221 47.83 MLLKPFNTVAVIFMLAFVFFILFFTGFLEFPPASTSIVPATDDLNLSAAEFAFDPFSDLITAFKKWDSQVGCDRFREKISGGLGNGSLSTSLQLVGGESNSECGGLKLNHVSVLVKGWTWIPDNLDNLYSCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPQRNQLARKLLSLLPHHSFGKCLNNVGGLDMALDMYPECANDASVTPKWWDHLHCAMSHYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFVPPHSIIDGSKFSSLEELASYVKRLADDPVAYAEYHAWRRCRALGNYRRTRAASLDTLPCRVCNAVSRRGGRNG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2693178 2696506 + CmoCh15G005650.1 Cmo15g00565 398073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00565 406 PANTHER ALPHA-(1,4)-FUCOSYLTRANSFERASE 13 405 - -
Cmo15g00565 406 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 13 405 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cmo15g00565 406 Gene3D - 171 379 IPR038577 -
Cmo15g00565 406 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 401 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cmo15g00565 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 99 400 - -
Cmo15g00565 406 PIRSF FucT_plant 1 406 IPR017177 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00565 Cmo-Chr15:2693178 Cmo16g00380 Cmo-Chr16:1749715 7.55E-15 dispersed
Cmo15g00565 Cmo-Chr15:2693178 Cmo04g02596 Cmo-Chr4:18971173 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00565 K14412 - csv:101216230 764.607