Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00576 ATGGCGGCTATGATTCCGGCACCAGTGATTTCTGCTCCGATTCAAACGGCGGTCATTCCTCCTCCGGTGGGCTCTGTGGCCACTGGAGAAGTTTTTTTGAGTTCTTCATTGTATGTGGGCGATCTGGAGCATAACGTGAACGAGGCACAGCTTTTGGAACTGTTTAGCCGTGTGGCTCAGGTTGTCTCCCTTAGGGTTTGCAGGGATCAGGCACGCAGGGTATCGCTTGGATATGCTTATGTTAATTTTAGCAATCATCAAGATGGTTCGTTATTCCCTATGACTGCCATGGAACACTTGAATTTCTCCTCTATTAACGGGAAGCCTATCAGGATTATGATCTCAAATCGAGATCCTAGCATTCGGAAAAGTGGCTATGCAAATGTTTTTATCAAAAATCTGGACGCATCAATTAATAACAAAGCATTGCATGATACATTTGCTTCTTTCGGTACTGTTCTTTCTTGTAAAGTTGCGCTTGATAGCAATGGTCAATCCAAAGGTTATGGATTTGTGCAATTTGATACCAAGGAAGCAGCCGAAAGTGCCATAATAAAGTTGAATGGCATGCTCCTCAATGACAAGCAAGTATATGTTGGCCATTTCATTCGACGCCAGGATAGGATGCGAGCAAATGAATTACAATTTACTAATGTTTACGTAAAAAATTTACCAGAAAATATGATGGACGATGGCCTAAAAAATCTGTTTGGTGTACATGGTACCATTACTAGTGCAGTTGTTAAGACCGATTCAAATGGAAAGTCCAAAGGTTTTGGTTTTGTGAACTTTGAGAGCACAGACTCTGCTGCAGCTGCAGTTGAAAAGCTGAATGGTACCCTCATTGGTGAGGACAAGATTTTGTACGTAGGCAAGGCTCAAAGGAAAGCAGAAAGGGAGGCTGAATTGAAAGAAAAATTCGAACGGGATAGAAAGATCAGATTTGATAAATTACAAGGCGCAAATTTGTACATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTTAAAGAATTATTCTCCGAGTATGGAACAATCACATCATGCAAGGTTATGCTTGACGAAAATGGAGTGAGCAAGGGGACTGGTTTTGTTGCCTTTTCTTCACCAGATGATGCAGCTAGAGCCATAAATGAAATGAATAGAAAGATGAAAGGAAGGAAGCCTCTGTATGTGGCTGTTGCCCAGCGCAAGGAAGAAAGAAAGGCCCAGCTACAGACACAGTTTGCCCATATCCGAGTAGCTAGTGAAATATCATCACTGACCTCAGGAATGCCAGGATTTCATCCAGGGGCACACCGACTTGCTCCTCAGCAGCTGTATTATGGTCAGGGAAACCCCGGGCTGGTGCCCCCACCGCCTGGATACAGCTTCCAGCCTCAACTTATGAACGGAATGCGACCTAGTATGGGCCCCAACTTCATCATGCCTTACCAGTTTCAGAGACAAGTACAGCCTGGGCCACGCTCGGGGATCAGGCGTGGTGGAAATTCACAACCTGTACATCAGCAGCAGCAGCAGCAGCAGTTAATGCTCCGTGGCGCTGGACAAGGTTATAGATACATGAACAATGCACGAAATGGATTAGAGCCGCCGGTCCTGCCCCATGGTCTTGTTGGTCCAATGATGCCTCTAGGTTTTGATAGTTCTGGGATGTCTAGCCCACCAATCGACATCCAGCGATCAAGGGCTGTGCCTACTTCAACACTCGCATCTGCATTAGCTTCTGCTACACCTACACATCAGCGTTTGGTATGGCACCATATGCTCGGCGAGCAGCTGTATCCACTCGTAGAACGTCTCGAGCCAACTCATGCGGCAAAGGTTACTGGAATGTTGCTCGAGATGGACCAGCCAGAGGTGCTTCATCTCATTGAATCACCTGATGACTTGAAGAATAAGGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCGTCGGAACCTGACCTCTCTGATCAGCTTGGTTCGTTGGTGCTGACCAAATGA 1992 45.83 MAAMIPAPVISAPIQTAVIPPPVGSVATGEVFLSSSLYVGDLEHNVNEAQLLELFSRVAQVVSLRVCRDQARRVSLGYAYVNFSNHQDGSLFPMTAMEHLNFSSINGKPIRIMISNRDPSIRKSGYANVFIKNLDASINNKALHDTFASFGTVLSCKVALDSNGQSKGYGFVQFDTKEAAESAIIKLNGMLLNDKQVYVGHFIRRQDRMRANELQFTNVYVKNLPENMMDDGLKNLFGVHGTITSAVVKTDSNGKSKGFGFVNFESTDSAAAAVEKLNGTLIGEDKILYVGKAQRKAEREAELKEKFERDRKIRFDKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDENGVSKGTGFVAFSSPDDAARAINEMNRKMKGRKPLYVAVAQRKEERKAQLQTQFAHIRVASEISSLTSGMPGFHPGAHRLAPQQLYYGQGNPGLVPPPPGYSFQPQLMNGMRPSMGPNFIMPYQFQRQVQPGPRSGIRRGGNSQPVHQQQQQQQLMLRGAGQGYRYMNNARNGLEPPVLPHGLVGPMMPLGFDSSGMSSPPIDIQRSRAVPTSTLASALASATPTHQRLVWHHMLGEQLYPLVERLEPTHAAKVTGMLLEMDQPEVLHLIESPDDLKNKVAEAMEVLRKASSEPDLSDQLGSLVLTK 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2753702 2757129 + CmoCh15G005760.1 Cmo15g00576 398084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00576 663 SUPERFAMILY RNA-binding domain, RBD 216 400 IPR035979 GO:0003676
Cmo15g00576 663 CDD RRM3_I_PABPs 216 296 - -
Cmo15g00576 663 CDD RRM4_I_PABPs 320 398 - -
Cmo15g00576 663 CDD RRM2_I_PABPs 125 201 IPR045305 -
Cmo15g00576 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Cmo15g00576 663 SMART rrm2_1 218 290 IPR003954 GO:0003676
Cmo15g00576 663 SMART rrm2_1 128 200 IPR003954 GO:0003676
Cmo15g00576 663 SMART rrm2_1 322 393 IPR003954 GO:0003676
Cmo15g00576 663 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 571 648 IPR002004 GO:0003723
Cmo15g00576 663 Coils Coil 290 310 - -
Cmo15g00576 663 MobiDBLite consensus disorder prediction 486 508 - -
Cmo15g00576 663 Gene3D - 203 306 IPR012677 -
Cmo15g00576 663 Gene3D - 307 410 IPR012677 -
Cmo15g00576 663 PANTHER POLYADENYLATE-BINDING PROTEIN 33 651 - -
Cmo15g00576 663 SMART poly_2 579 646 IPR002004 GO:0003723
Cmo15g00576 663 SUPERFAMILY PABC (PABP) domain 504 650 IPR036053 GO:0003723
Cmo15g00576 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 398 IPR000504 GO:0003723
Cmo15g00576 663 SUPERFAMILY RNA-binding domain, RBD 35 206 IPR035979 GO:0003676
Cmo15g00576 663 Gene3D - 563 648 - -
Cmo15g00576 663 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 35 644 IPR006515 GO:0003723
Cmo15g00576 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 117 IPR000504 GO:0003723
Cmo15g00576 663 SMART rrm1_1 218 291 IPR000504 GO:0003723
Cmo15g00576 663 SMART rrm1_1 128 200 IPR000504 GO:0003723
Cmo15g00576 663 SMART rrm1_1 322 394 IPR000504 GO:0003723
Cmo15g00576 663 SMART rrm1_1 36 113 IPR000504 GO:0003723
Cmo15g00576 663 PANTHER RNA BINDING PROTEIN 33 651 - -
Cmo15g00576 663 CDD RRM1_I_PABPs 36 119 - -
Cmo15g00576 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 199 IPR000504 GO:0003723
Cmo15g00576 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 391 IPR000504 GO:0003723
Cmo15g00576 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 108 IPR000504 GO:0003723
Cmo15g00576 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 197 IPR000504 GO:0003723
Cmo15g00576 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 287 IPR000504 GO:0003723
Cmo15g00576 663 Pfam Poly-adenylate binding protein, unique domain 588 643 IPR002004 GO:0003723
Cmo15g00576 663 Gene3D - 127 201 IPR012677 -
Cmo15g00576 663 Gene3D - 33 126 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01376 Cmo-Chr11:9611881 Cmo15g00576 Cmo-Chr15:2753702 0 dispersed
Cmo14g00244 Cmo-Chr14:1119458 Cmo15g00576 Cmo-Chr15:2753702 1.21E-141 dispersed
Cmo15g00576 Cmo-Chr15:2753702 Cmo16g00375 Cmo-Chr16:1721565 0 dispersed
Cmo20g00177 Cmo-Chr20:884234 Cmo15g00576 Cmo-Chr15:2753702 7.81E-08 dispersed
Cmo15g00576 Cmo-Chr15:2753702 Cmo04g02588 Cmo-Chr4:18916352 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00576 K13126 - csv:101219081 1026.16