Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00577 ATGGAAGAGGCGATCCATCGATTTCTTGAACGATGGCTATTGTACCTTATAGTTATGTGCTTAAGCTTATCAGTCGCTGCTCTCTCTCCCGATGGAGAAGCGGTTCTTTCTCTCATTGCGGCTGCTGGTCCTTCTGCAACATCTTCTTCTTCTTCTGTTCTTGATTCTTGGAATCCATCTAGCCAAAACCCTTGTTCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCGTTATCTCTCCCAAAAACGTTCCTAAACCTATCGTTTTTGCCTCCGGAGTTGTCCTCTCTATCTTCTCTGCAGCTTCTCAATCTATCCTCCACCAATGTATCTGGCTCAATCCCTCCTTCTTTTGGCCTGCTCACTCATCTTCGCCTGTTGGACCTCTCCTCCAACAATCTCTATGGCCCTATTCCTCCTCAGCTTGGTTCTCTTTCATCGCTGCAATTCCTTTTCCTTAATTCCAATAAACTGTCTGGTAAGATTCCTCCTCAGCTTGCTAATCTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCTGTTTAATGGCTCCATACCATCGCAGTTAGGTTCTTTGTTGTCTCTTCAAGAGTTTCGAATAGGAGGGAATCCATATCTTTCTGGTGACATTCCACCGGAAATAGGGCTGCTTACTAATCTCACTACATTTGGGGCGGCGGCTACTGCCCTCTCCGGCGCCTTACCGTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCACTCTATGACACTGAGATGTCTGGTTCTATACCTCCTGAGTTGGGATTTTGTTCTGAGCTAAGGGATTTGTATTTACACATGAACAAGCTTACTGGTAATATTCCTCCTCAGTTGGGTAAGTTGCAGAAACTTACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGGTCGATACCGTCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATATTTCTGGTGAAATCCCAAGTGATTTAGGGAAATTAGTCGTTCTTGAACAGCTTCATTTATCTGATAATTCGATTTCGGGTTCGATACCATGGCAGTTGGGGAACTGCACAAGCTTAACTGCTCTTCAGCTTGATAACAATCAATTATCAGGTGTAATTCCATCCCAACTTGGCAATTTAAAATCCCTGCAAAGCTTTTTCTTATGGGGCAATTCTGTATCAGGAACTGTACCATCTTCCTTTGGTAACTGCACTGAGTTATATGCTCTTGATCTTTCAAGAAACAAGCTCTCTGGGATTATCCCAGAGGAAATTTTCAGCTTGAAGAAGTTGAGCAAGCTATTGCTCCTTGGAAATTCTTTATCTGGTGGGTTGCCTCCAAGTGTTGCAAATTGTCAATCATTGGTGAGGTTGAGGCTTGGAGAAAACAAGCTTTCAGGCAAGATTCCAAAGGAGGTAGGCCAGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCGTTTTTCGGGTGGTCTTCCGTCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATATCTGGGGAAATTCCTCACCAGCTTGGGGATTTGGTGAACTTGGAGCAGCTAGATCTCAGTCGGAACAGCTTCACTGGTGAAATTCCTCAGAGCTTTGGAAACTTCAGTTATTTGAATAAGCTTATTCTCAGTAATAATCTACTGACAGGGTCAATCCCAAAGTCTATTAAGAACCTGGAGAAACTAACTCTACTTGATTGGAGTAGCAACAATCTCTCTGGCAAGATACCACCAGAAATTGGTTACATGAAGAGCTTGTCTATCAGTCTGGACTTGAGCTCGAACAGGATAAGCGGAGAAATTCCCGAGTCGATATCGAGTTTGACACAGTTACAGTCACTTGATCTTTCCCATAACATGCTTTCTGGAAATATTAAAGTGTTGGGCCAGCTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCTGGTCCAATGCCTGTAACACCATTTTTTAGAACACTATCAGAAGATGCATATTATCAAAACCTTAATCTTTGTGAATCACTTGATGGATTTACGTGTTCGTCGAGTTCGTTGCGTAGAAATGGCTTGAAGTCTGCAAAAGCTGCTGCATTAATCTCCATCATTCTTGTTGCAGTTGTCGTCGTACTTTTTGCTTTGTGGATGCTAGTTTCACGAAATCGAAAGTACATGGACGAGAAGTATTCAGGGACGTTGCCCTCGGCATCGGCTGCCGAGGACTTCTCTTATCCATGGACCTTCATCCCGTTTCAGAAGCTCAACTTTTCCATAGGTAACATCTTGGAATCCATGAAAGATGAAAATATAATTGGAAAAGGTTGTTCTGGAGTTGTTTATAAGGCAGATATGCCCAATGGTGAATTAGTTGCTGTAAAGAAACTATGGAAAACAAAGCAAGATGAAGAAGCAGTTGACTCTTGTGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATCGTAAAGCTCATCGGTTATTGTTCCAATAGAAGTGTCAAGCTACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATCTCGACTGGGAGACGAGGTATAAGATTGCGGTCGGGACAGCTCAGGGCCTGGCTTATCTTCATCATGATTGTGTGCCTGCAATTCTTCACAGAGATGTCAAATGCAATAACATACTTCTAGACTCGAAGTTTGAAGCTTATTTGGCAGATTTTGGCCTGGCGAAGTTGATGAATGCTCCTAATTATCATCATGCGATTTCGAGAGTAGCCGGGTCTTACGGTTATATTGCCCCAGAATATGGATATACCATGAACATAACTGAGAAGAGCGATGTCTATAGTTATGGAGTTGTATTACTAGAGATACTAAGCGGCCGTAGTGCAATCGAGACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTAAAGAAGAAGATGGCAAGCTTCGAACCCGCGATAACGATACTCGACTCAAAGCTCCAGAGTTTACCAGATCAAATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTCTGTGTGAACTCCTCCCCAGCAGAAAGGCCAACAATGAAGGAGGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGACCAAAACCTCCCAACCTCTAATCAAGCACTCCTCAATGAATGTCGACGATCTTCATCGCCGTCCAGTGTTTTCAATGCTCCACGATGCAGGCATGGATCTCGTGAAGCAGCAGCGAAGGAGCGGGAATAAGTGGATCTGTGCAGTCTGCAACGAGAAGCAATCGGTGCAGAAGGTGTTTGCTCGAGCTCCGATGGCTAAAGACGTCCGTAAGTTCGTACAGAGCTTCAATATGTCTCGGAAATATGCGGATGAACAGACGAAAGTCGATGAGATACTTGATGAGGAAATTGTTGACGAGGATCAGCTTGATTTCAACGCGAAGAGAAAAAGACGTAGCGATTGGAGTGAGTACCTCGATCTCGAGGAAGATCGCAGCCAAACTGGAAGAGAAAACGAACGAGAATTAGGGAGTGATTTTGCTGATGGAAAGTTTGTGACGGAGCTTCCAGAAGAAAAAACCAGGAAGCACTGTTCAACGAGCTGTTCAAGCAGGCCGGAAGGTGTTGAAGGAAAAAGATTTTACAGACCAGTTTTCCCGAAGAGGACACACATTGCCAAGAATTCAGCCATTCAAGCATCAAAATGGAGGAAAGGCGTCCGAGAAGATGATGAAAAAGTTTCGTTGAAAGCCAAACATCATCTAAGCTCCAAAGATGAGATTCGAAACTGGGAATCGCCGTCGTCAAAAGACGATGAAAGTGCTTGCATATTAGCCAAGGTAGGAGGTCCTTCTTCCAAGTGGAGTGAATACATAACTGAAGATGACAACTGCGGAGGCAGAAAGGGAGAAAATATGGGAACAGAACAGGACATGGATACCTTGAAGATGATCACAAACGATGAAATTGTTGAAGATGATATCCACCCTGATTTCAAATGA 4077 43.07 MEEAIHRFLERWLLYLIVMCLSLSVAALSPDGEAVLSLIAAAGPSATSSSSSVLDSWNPSSQNPCSWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNKLSGKIPPQLANLTSLQSLCLQDNLFNGSIPSQLGSLLSLQEFRIGGNPYLSGDIPPEIGLLTNLTTFGAAATALSGALPSTFGNLINLQTLSLYDTEMSGSIPPELGFCSELRDLYLHMNKLTGNIPPQLGKLQKLTSLFLWGNALSGSIPSEISNCSALVVFDASENDISGEIPSDLGKLVVLEQLHLSDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLKSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLSGIIPEEIFSLKKLSKLLLLGNSLSGGLPPSVANCQSLVRLRLGENKLSGKIPKEVGQLQNLVFLDLYMNRFSGGLPSEIANITVLELLDVHNNYISGEIPHQLGDLVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILSNNLLTGSIPKSIKNLEKLTLLDWSSNNLSGKIPPEIGYMKSLSISLDLSSNRISGEIPESISSLTQLQSLDLSHNMLSGNIKVLGQLTSLTSLNISYNNFSGPMPVTPFFRTLSEDAYYQNLNLCESLDGFTCSSSSLRRNGLKSAKAAALISIILVAVVVVLFALWMLVSRNRKYMDEKYSGTLPSASAAEDFSYPWTFIPFQKLNFSIGNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNAPNYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMASFEPAITILDSKLQSLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWTKTSQPLIKHSSMNVDDLHRRPVFSMLHDAGMDLVKQQRRSGNKWICAVCNEKQSVQKVFARAPMAKDVRKFVQSFNMSRKYADEQTKVDEILDEEIVDEDQLDFNAKRKRRSDWSEYLDLEEDRSQTGRENERELGSDFADGKFVTELPEEKTRKHCSTSCSSRPEGVEGKRFYRPVFPKRTHIAKNSAIQASKWRKGVREDDEKVSLKAKHHLSSKDEIRNWESPSSKDDESACILAKVGGPSSKWSEYITEDDNCGGRKGENMGTEQDMDTLKMITNDEIVEDDIHPDFK 1358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2757736 2764267 - CmoCh15G005770.1 Cmo15g00577 398085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 384 476 IPR032675 -
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 477 573 IPR032675 -
Cmo15g00577 1358 Gene3D Phosphorylase Kinase; domain 1 760 860 - -
Cmo15g00577 1358 Pfam Leucine rich repeat 611 666 IPR001611 GO:0005515
Cmo15g00577 1358 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515
Cmo15g00577 1358 SUPERFAMILY L domain-like 376 691 - -
Cmo15g00577 1358 PANTHER - 12 1076 - -
Cmo15g00577 1358 SMART serkin_6 783 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00577 1358 ProSiteProfiles Protein kinase domain profile. 783 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 284 383 IPR032675 -
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 191 283 IPR032675 -
Cmo15g00577 1358 SUPERFAMILY RNI-like 106 460 - -
Cmo15g00577 1358 PRINTS Leucine-rich repeat signature 630 643 - -
Cmo15g00577 1358 PRINTS Leucine-rich repeat signature 416 429 - -
Cmo15g00577 1358 SUPERFAMILY Protein kinase-like (PK-like) 767 1056 IPR011009 -
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 41 190 IPR032675 -
Cmo15g00577 1358 Gene3D Ribonuclease Inhibitor 574 701 IPR032675 -
Cmo15g00577 1358 Pfam Leucine rich repeat N-terminal domain 30 73 IPR013210 -
Cmo15g00577 1358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 903 915 IPR008271 GO:0004672|GO:0006468
Cmo15g00577 1358 Pfam Leucine Rich Repeat 535 557 IPR001611 GO:0005515
Cmo15g00577 1358 ProSitePatterns Protein kinases ATP-binding region signature. 789 812 IPR017441 GO:0005524
Cmo15g00577 1358 Pfam MRN-interacting protein 1102 1181 IPR032739 -
Cmo15g00577 1358 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Cmo15g00577 1358 Gene3D Transferase(Phosphotransferase) domain 1 861 1078 - -
Cmo15g00577 1358 Pfam Protein kinase domain 785 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00577 1358 SMART LRR_typ_2 605 630 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 124 147 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 389 412 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 172 196 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 148 171 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 653 686 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 341 365 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 533 556 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 413 437 IPR003591 -
Cmo15g00577 1358 SMART LRR_typ_2 293 317 IPR003591 -
Cmo15g00577 1358 PANTHER UNNAMED PRODUCT 12 1076 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00577 Cmo-Chr15:2757736 Cmo17g00120 Cmo-Chr17:661522 0 dispersed
Cmo15g00577 Cmo-Chr15:2757736 Cmo04g02582 Cmo-Chr4:18896007 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74912 PF00069 Pkinase 1.60E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00577 - - csv:101212866 1855.88