Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00590 ATGGCCGAACTTCGAGCCGCTACCAAGAATTTCAGCAACGATTTAATCGTCGGCGATGGCTCTTTCGGCCTCGTCTACAAGGCTCGCCTCTCCTCCGGCGCTACTGTTGCCATCAAGAAGCTCAATCCCGACGCCTTCCAAGGATTCCGAGAATTCCGAGCCGAGATGGAGACTCTCGGAAAACTCCGCCATCGGAACATCGTCAAAATGTTAGGATACTGTATTTCCGGCTCCGATAGGCTTTTGATCTACGAATTCATTGAGAGAGGAAGCCTGGATAATTGCTTGTACGAGACGTCGACTTCGGCGGAGGCCGATGAGGAGTCCGATGGATATTTGCCCTCGCGGCTACCATTGCCATGGGAGACAAGGCTGAAGATCATGAGGGGCGTTGCTAATGGGCTTTCGTACTTACATGGGCTTTCTCAGCCCATTATCCATAGAGACATAAAGGCCGGCAATGTCTTATTGGACTCCGAATTCGAGGCCCATATCGCGGATTTTGGGCTGGCCCGTATGATTGAGAGTTCTAATTCCCACGTGTCCACTCAGTTCGCCGGAACCATGGGCTACATGCCGCCGGAGTACAGGAACGGATTGACGGGGGCCACGTTGAAGGCTGACGTGTACAGTTTTGGGATTTTAATGTTCGAGGTTGCTATGGGCCGGAGGCCCAATTTACCTATGGTATTGGACGACAAAGAAGTGGGCTTAATAGAATGGGCTCGGATTTTAGTGGCCCAAAACAGACACATGGAAATGGTCGATGCTAGCATTTCGAGGGAGGAGCTTATGGAGGCCAATGTGAAGGAGTATTTTAGGATTGCTTGTTTGTGCACGAGTGAGAGGTCCAAGGAGAGGCCTCCTATGTCTACTGTTGTCGAGTTTTTGGATCGAATTTGCGACGTGAAGTTGTGTGACGACGATAACGACGAGTAG 939 50.91 MAELRAATKNFSNDLIVGDGSFGLVYKARLSSGATVAIKKLNPDAFQGFREFRAEMETLGKLRHRNIVKMLGYCISGSDRLLIYEFIERGSLDNCLYETSTSAEADEESDGYLPSRLPLPWETRLKIMRGVANGLSYLHGLSQPIIHRDIKAGNVLLDSEFEAHIADFGLARMIESSNSHVSTQFAGTMGYMPPEYRNGLTGATLKADVYSFGILMFEVAMGRRPNLPMVLDDKEVGLIEWARILVAQNRHMEMVDASISREELMEANVKEYFRIACLCTSERSKERPPMSTVVEFLDRICDVKLCDDDNDE 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2844691 2845629 - CmoCh15G005900.1 Cmo15g00590 398098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00590 312 Gene3D Transferase(Phosphotransferase) domain 1 87 307 - -
Cmo15g00590 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cmo15g00590 312 PIRSF ILK 2 308 - -
Cmo15g00590 312 SUPERFAMILY Protein kinase-like (PK-like) 3 297 IPR011009 -
Cmo15g00590 312 CDD STKc_IRAK 17 300 - -
Cmo15g00590 312 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 299 - -
Cmo15g00590 312 SMART serkin_6 11 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00590 312 PANTHER OS01G0253100 PROTEIN 1 299 IPR045271 GO:0004714|GO:0006468
Cmo15g00590 312 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Cmo15g00590 312 Pfam Protein tyrosine and serine/threonine kinase 16 297 IPR001245 GO:0004672|GO:0006468
Cmo15g00590 312 ProSiteProfiles Protein kinase domain profile. 11 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo15g00590 312 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00590 - - - cmo:103485602 545.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00590 Cmo-Chr15:2844691 Cmo04g00003 Cmo-Chr4:10055 2.59E-74 dispersed
Cmo15g00590 Cmo-Chr15:2844691 Cmo18g01258 Cmo-Chr18:12320265 1.16E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74913 PF07714 PK_Tyr_Ser-Thr 3.80E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00590 Cmo_Chr15 FPKM 2.756141 2.676601 4.101645 3.433472 7.435378 9.223368 6.949486 6.90232 7.02921 8.122122