Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00591 ATGTTTACGCTATTTCTGTTCGGATTTTCAGTTGCACAACACAAGAAGCAGAAGGAGGAGGATATCGCCGTCTGTGTCTGCAGATTTGATGCTAATGATAACGATAGTGAGTATAGCTGTCCGAACTGTGAGACAAGGAAGTGGAATGTGTTGGGTGAAATAAGGGTTGGAATATTTGCAAAGCAAGACATTACCATTGGGACTGAATTGTCATATGATTATAATTTCGAATGGTATGGAGGTGCCAAGGTTCGCTGCCTCTGTGGTGCAAGCAGCTGTTCAGGATTCCTTGGAGCCAAGTCTCGTGGGTTCCTGGAGGATACCTATTTGTGGGAAGATGACGATGATAGGTATTCTGTTGAGAAAATTCCACTGTACGATTCTGCAGAGGATGAGCCATTCGTTAAGCTCCACACTGTATTAAATAACCCATATTCTGAGTTTGAGGGTTATCTGAAAAATGAGAACCCAATGATCTTGGACGATAATTTGGGAGCGGAACAGCAGCTGGTATCCACTGCATTAATTGATACCTCGAAGAATTCAGTTCAATTACAAAATATAGTTGTGGGAGAAATTAAAAATGAAGCAAAAGAGGAGCCAGAAGACCATCCACAGAATACGCAGCAGACCTTTTCCCAGCAGAATGCAATGATATCTCGAATCCGAAGTAACACCGCATGCCGTAATTATCGCATTGGACCTGGACCTGCGGCCAAAAAACGAGCAAGAAACTTAACGAATGGAAGGACGAAAAATTTTACCCTGAAGCAAGTAGATGCAAAATATGTTGCTCGATTGTTAGAGTTGAAGGAAGCACAAGAAGAAGTCTTACAGTATGAGGAAACGAAGAATAAAGCTACCTCCGAACTTGATTTGTTGTACAATGAAATACGACCCGCCATTGAAGAATATGAGAGGGACAGCCAAGACAGTGTAGCTACCAGTGTTGCGGAAAAGTGGATAGAAGCAAGCTGTTTGAAACTGAAGGCGGAATTTGATCTTTATTCTTCTATAGTCAGAAATGTTGCTTGCACTCCATTAAGGTCAGGTATTGGCTCTGGACTACAGGGAAATGCTTCTGTTCAACACGTCCATTTCAGGGTCGGGGTGGGGCTTGAACGTAGGAGCAGTAACTATTAA 1143 42.61 MFTLFLFGFSVAQHKKQKEEDIAVCVCRFDANDNDSEYSCPNCETRKWNVLGEIRVGIFAKQDITIGTELSYDYNFEWYGGAKVRCLCGASSCSGFLGAKSRGFLEDTYLWEDDDDRYSVEKIPLYDSAEDEPFVKLHTVLNNPYSEFEGYLKNENPMILDDNLGAEQQLVSTALIDTSKNSVQLQNIVVGEIKNEAKEEPEDHPQNTQQTFSQQNAMISRIRSNTACRNYRIGPGPAAKKRARNLTNGRTKNFTLKQVDAKYVARLLELKEAQEEVLQYEETKNKATSELDLLYNEIRPAIEEYERDSQDSVATSVAEKWIEASCLKLKAEFDLYSSIVRNVACTPLRSGIGSGLQGNASVQHVHFRVGVGLERRSSNY 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2847649 2860396 - CmoCh15G005910.1 Cmo15g00591 398099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00591 380 ProSiteProfiles Post-SET domain profile. 82 98 IPR003616 -
Cmo15g00591 380 Gene3D SET domain 26 108 IPR046341 -
Cmo15g00591 380 PANTHER SET DOMAIN PROTEINS 38 309 - -
Cmo15g00591 380 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 38 309 - -
Cmo15g00591 380 Pfam SET domain 39 75 IPR001214 GO:0005515
Cmo15g00591 380 SMART PostSET_3 82 98 IPR003616 -
Cmo15g00591 380 Coils Coil 270 297 - -
Cmo15g00591 380 SUPERFAMILY SET domain 40 95 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00591 - - - cmo:103485603 575.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00591 Cmo-Chr15:2847649 Cmo04g02507 Cmo-Chr4:18450568 3.07E-13 dispersed
Cmo15g00591 Cmo-Chr15:2847649 Cmo10g00478 Cmo-Chr10:2135040 6.51E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1348 . . . . . . . . . Cmo15g00591 . . . . . . . Bhi04g01759 Tan11g1119 . . . . . . . . . . . . . . . . . . . Cme03g00297 . . . . . . . . . . . . . . Car15g00543 . . . . . . . . . . . . . . . . . . Chy03g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010525 1 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11149 PF00856 SET 8.00E-05 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00591 Cmo_Chr15 FPKM 12.201358 14.151214 18.488142 17.307076 11.4383 10.282936 10.434599 17.526043 18.957914 18.171633