Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00598 ATGGCATCATACAAGCTCCTGGCATCTTCCAATTCGCGAAATTCGGATCTATTGCGAGGTTCTTCTTCTTCTTCTTTCTCTTCTGCTTCTCTTTTAGAATCCCAATTTCTTTCGAATCACCTGAGGAATAATGACATCCCAACTCGCAATCAAAGCCATAGTCGTAGCTCAATGACCGTCGATGGCTTACTTGGCAATGGGTACGATTCCAATCCCACGGAGTCGTCCATTCTCTTAGATGCCCAGATTACTCTTGTTGATTCCCATAACCCTTCTTCTCTTCCCATGAATACGACTACAGCAACCACCACCACCACCACCACCACTAATTCCTCTGCCGTCATTGATAGCAATCACAATACTTCCTCCGGTGCGGCGCCCAAAACTGTGGATGATGTGTGGAGGGAGATTGTTTCTGGTGAGAGGAAGGAGTTGAAGGAGGAGGTTCCTGACGAGTTCATAACCCTCGAGGATTATCTCTTGAGAACTGGGGTCATGCCTGTTGAGGATGTCAAATTGCCGCAGACGGAGAGGCTGAGTGGAGGGATTTTTTCGTTTGATCCAATTCGAGCCAGCACATTTCAGGCCTTGGATAAGGTCGAAGGATCCATTATTGGATTTGCTAATGGGGTCGATTTGATCGGTAGTGGAGGAAGTGGGGGGAGAGGCAAAAGAGGGCGAGCTGCTTTGGAACCTTTAGATAAGGCTGCAGAGCAAAGACAGAGGAGGATGATCAAGAATAGGGAGTCTGCAGCAAGATCAAGGGAACGGAAGCAGGCTTATCAAGTGGAATTAGAATCATTAGCTGTAAGACTAGAGGAGGAGAAGGAGCGGCTTTTGAGGGAAAAGGCTGAGAGGACTAAAGAGAGGTTCGAGCAGCTAATGGAGAAGGTGATTCCTGTGGTTGAAAAGCGACGACCCCCACGAGTAATTCGGCGAGTTAATTCCATGAAATGGTGA 960 47.71 MASYKLLASSNSRNSDLLRGSSSSSFSSASLLESQFLSNHLRNNDIPTRNQSHSRSSMTVDGLLGNGYDSNPTESSILLDAQITLVDSHNPSSLPMNTTTATTTTTTTTNSSAVIDSNHNTSSGAAPKTVDDVWREIVSGERKELKEEVPDEFITLEDYLLRTGVMPVEDVKLPQTERLSGGIFSFDPIRASTFQALDKVEGSIIGFANGVDLIGSGGSGGRGKRGRAALEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEEKERLLREKAERTKERFEQLMEKVIPVVEKRRPPRVIRRVNSMKW 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2909179 2913201 - CmoCh15G005980.1 Cmo15g00598 398106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00598 319 Pfam bZIP transcription factor 237 297 IPR004827 GO:0003700|GO:0006355
Cmo15g00598 319 MobiDBLite consensus disorder prediction 1 20 - -
Cmo15g00598 319 MobiDBLite consensus disorder prediction 90 127 - -
Cmo15g00598 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 237 289 IPR004827 GO:0003700|GO:0006355
Cmo15g00598 319 Coils Coil 258 297 - -
Cmo15g00598 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 242 257 IPR004827 GO:0003700|GO:0006355
Cmo15g00598 319 PANTHER BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 1 318 - -
Cmo15g00598 319 SUPERFAMILY Leucine zipper domain 240 290 IPR046347 GO:0003700|GO:0006355
Cmo15g00598 319 Gene3D - 237 298 - -
Cmo15g00598 319 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1 318 IPR043452 GO:0003700|GO:0045893
Cmo15g00598 319 CDD bZIP_plant_BZIP46 239 266 - -
Cmo15g00598 319 SMART brlzneu 235 299 IPR004827 GO:0003700|GO:0006355
Cmo15g00598 319 MobiDBLite consensus disorder prediction 42 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00598 K14432 ABF; ABA responsive element binding factor - csv:101223110 417.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02568 Cmo15g00598 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01012 Cmo-Chr1:7373490 Cmo15g00598 Cmo-Chr15:2909179 3.27E-28 dispersed
Cmo15g00598 Cmo-Chr15:2909179 Cmo04g02610 Cmo-Chr4:19022595 1.26E-16 dispersed
Cmo15g00598 Cmo-Chr15:2909179 Cmo04g02568 Cmo-Chr4:18794775 3.27E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11151 PF00170 bZIP_1 2.40E-10 CL0018 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00598 Cmo_Chr15 FPKM 33.778404 35.995426 28.768179 26.864227 13.889468 14.663712 16.492056 35.096203 36.667072 33.78231