Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00602 | ATGTCATTCCGAAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGTCGATGGGCTAGCCTTCCGCCCGAGTTATTGTGCGATGTGGTTCGAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTGTGTAGGTCATGGAGGGATATGTGTAAAGAAATGGTCAAAAGTCCTGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAGCAGCCTGGGCCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTGACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACGGAGTACGTTATATCGTTAGCCGCGGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTTTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGAACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGTTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAACGAAGATAGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCGGTCAAGAACTTTCAGCTGATTGCTGCAACCTCAGCTGGTGCAGAAGTGGCGGCGGCAGCAGCAGCAGCATCACAGGCACCTCCACAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATATCCACTGTCGGCATTCCAGGCTTTTGCAATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG | 1311 | 47.98 | MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDSEGKDRPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSAGAEVAAAAAAASQAPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 2928155 | 2931478 | - | CmoCh15G006020.1 | Cmo15g00602 | 398110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00602 | 436 | Pfam | Tub family | 114 | 431 | IPR000007 | - | |
Cmo15g00602 | 436 | Gene3D | - | 48 | 100 | - | - | |
Cmo15g00602 | 436 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 436 | IPR025659 | - | |
Cmo15g00602 | 436 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Cmo15g00602 | 436 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 393 | 412 | IPR000007 | - | |
Cmo15g00602 | 436 | PRINTS | Tubby superfamily signature | 414 | 436 | IPR000007 | - | |
Cmo15g00602 | 436 | Gene3D | Tubby Protein; Chain A | 113 | 430 | IPR025659 | - | |
Cmo15g00602 | 436 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515 | |
Cmo15g00602 | 436 | PANTHER | TUBBY-RELATED | 1 | 436 | - | - | |
Cmo15g00602 | 436 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 436 | - | - | |
Cmo15g00602 | 436 | ProSitePatterns | Tub family signature 2. | 421 | 436 | IPR018066 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02565 | Cmo15g00602 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00542 | Cmo-Chr4:2688163 | Cmo15g00602 | Cmo-Chr15:2928155 | 0 | dispersed | |
Cmo15g00602 | Cmo-Chr15:2928155 | Cmo16g00390 | Cmo-Chr16:1804780 | 0 | dispersed | |
Cmo01g01055 | Cmo-Chr1:8461994 | Cmo15g00602 | Cmo-Chr15:2928155 | 1.56E-97 | transposed | |
Cmo15g00602 | Cmo-Chr15:2928155 | Cmo04g02565 | Cmo-Chr4:18784932 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11152 | PF01167 | Tub | 8.30E-116 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00602 | K19600 | - | cpep:111809239 | 849.736 |