Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00602 ATGTCATTCCGAAGCATACTTCGTGATGTGCGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACTAGTCGATGGGCTAGCCTTCCGCCCGAGTTATTGTGCGATGTGGTTCGAAGACTGGAGGCTAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTGTGTAGGTCATGGAGGGATATGTGTAAAGAAATGGTCAAAAGTCCTGAGTTCTCTGGGAAAATTACGTTCCCGATCGCCTTGAAGCAGCCTGGGCCACGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTGACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACGAGGCGAACTACTTCTACGGAGTACGTTATATCGTTAGCCGCGGACGATATATCAAGATCGAGCAATGGTTATATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACGCTTGGCCGAAGCCGAAGATTTTACTCGAAAAAGGTCTCGCCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAACGTATTAGGTACAAGGGGACCCCGGAGGATGAACTGCACCATGTACTCAATCCCCAATTCATCTCTTGAGCCAGGTTGTTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATGTCATTCTCCAAGTCGATCGATCATTCCACCGAGTTCAGCAGCTCCCGCTTCTCTGATGTTGCAGGAATGGTTGCTAACGAAGATAGCGAGGGGAAGGATCGACCCTTGGTTCTTCGGAACAAGGCGCCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACGGTTGCATCGGTCAAGAACTTTCAGCTGATTGCTGCAACCTCAGCTGGTGCAGAAGTGGCGGCGGCAGCAGCAGCAGCATCACAGGCACCTCCACAGCCCGCCCAACCTACGCATTCCGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATATCCACTGTCGGCATTCCAGGCTTTTGCAATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAG 1311 47.98 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPEFSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPNSSLEPGCSVPGQPELNPRPLEDSFRSMSFSKSIDHSTEFSSSRFSDVAGMVANEDSEGKDRPLVLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSAGAEVAAAAAAASQAPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2928155 2931478 - CmoCh15G006020.1 Cmo15g00602 398110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00602 436 Pfam Tub family 114 431 IPR000007 -
Cmo15g00602 436 Gene3D - 48 100 - -
Cmo15g00602 436 SUPERFAMILY Tubby C-terminal domain-like 102 436 IPR025659 -
Cmo15g00602 436 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Cmo15g00602 436 Pfam F-box domain 53 99 IPR001810 GO:0005515
Cmo15g00602 436 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 393 412 IPR000007 -
Cmo15g00602 436 PRINTS Tubby superfamily signature 414 436 IPR000007 -
Cmo15g00602 436 Gene3D Tubby Protein; Chain A 113 430 IPR025659 -
Cmo15g00602 436 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cmo15g00602 436 PANTHER TUBBY-RELATED 1 436 - -
Cmo15g00602 436 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 436 - -
Cmo15g00602 436 ProSitePatterns Tub family signature 2. 421 436 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02565 Cmo15g00602 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00542 Cmo-Chr4:2688163 Cmo15g00602 Cmo-Chr15:2928155 0 dispersed
Cmo15g00602 Cmo-Chr15:2928155 Cmo16g00390 Cmo-Chr16:1804780 0 dispersed
Cmo01g01055 Cmo-Chr1:8461994 Cmo15g00602 Cmo-Chr15:2928155 1.56E-97 transposed
Cmo15g00602 Cmo-Chr15:2928155 Cmo04g02565 Cmo-Chr4:18784932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11152 PF01167 Tub 8.30E-116 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00602 K19600 - cpep:111809239 849.736