Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00604 ATGGAAGGTAATTTATCACAAGGAGGGTTGATTCCAGGAGGAACCTCTTATGGAGGTCTCGATTTGCAAGGACCCTTTAAGGTTCATAGCCAAGCACAACACTCTCACGCCTTACACCAACAACATCATCCTCATACTCGTCAGGGATCTGCGGCCAATCCTTCCATTCAGGAGGGATTTTCACTTTCCATGGGAGTTGTACAAAATTGTGACCATGCCATGTCTTTGGTAGATTATAACAAGGGAGAAAGGTGTAAAAACTCGGCTAGTGACGAAGAGCCGAGCTTTACTGAGGATGGTATTGATGGTCATAATGAGACGAGTAAGGGGAAGAAGGGATCGGTATGGCATCGCGTGAAATGGACGGATAAAATGGTGAAGCTTCTGATTACAGCAGTGTCTTATATAGGAGATGATATTAATTCAGATTTTGATGGGGCTGGAAGAAGGAAATGCCAAATACAGAAGAAAGGTAAATGGAAATTGATATCAAAAGTCATGGCTGAAAGGGGCTATCAAGTTTCACCTCAGCAGTGTGAGGATAAGTTTAATGATCTCAATAAGAGGTATAAGAGGCTCAATGATATAATTGGGAGAGGCACTTCTTGCAAGGTTGTTGAGAACCCTGCACTTCTTGATCTTCTTGAGTATTTAACAGATAAAGAGAAGGATGATGTGAGAAAAATTTTAAACTCGAAGCAACTGTTCTATGAAGAGATGTGTTCTTATCATAATTCGAATCGACTTCATCTGCCCCATGATCCTGCTTTGCAGCGTTCTTTGCAGCTGGCTTTTAGAGCAAGGGATGATCACGATAATGACGAGCCAAGGAGACACCAAAATGATGATTTTGATGAAAACGAACATGATGAAACTGATGAACGTGATGATTTTGAGGAGAATTTTGCACCTCATGGGGACAATAGACGATCATTCGGGGTATTAGGAGGCTCAGTGAAGAGGCTAAGACGAGACCAAGACCATGATGATACTCATGCCTGTGGAAAATCCTTGAGTTCTCATGCTCACTCACAAGCACAGTTTGCTCAAGCTGATACAGCTCACTTAGAAACTGAAGGTATGAAGGGTTCAACATCGCAAAAACAGTGGATGGAGCTTCGTTTACTCCAATTGGAAGATCAAAAGCTTCAAATTCAAGTTGAAATGTTGGAATTGGAGAAACAGAAGTTCAAGTGGGAGAGATTCAACAAGAAAAAGGACCGTGAGTTGGAAAAAATGAGGATGGTAAATGAGAGGATGAAGCTTGAAAACGAGCGCATTGCACTCGACTTAAAGCAAAAGGAAATTGGCTCGGGATTTCATTGA 1326 41.78 MEGNLSQGGLIPGGTSYGGLDLQGPFKVHSQAQHSHALHQQHHPHTRQGSAANPSIQEGFSLSMGVVQNCDHAMSLVDYNKGERCKNSASDEEPSFTEDGIDGHNETSKGKKGSVWHRVKWTDKMVKLLITAVSYIGDDINSDFDGAGRRKCQIQKKGKWKLISKVMAERGYQVSPQQCEDKFNDLNKRYKRLNDIIGRGTSCKVVENPALLDLLEYLTDKEKDDVRKILNSKQLFYEEMCSYHNSNRLHLPHDPALQRSLQLAFRARDDHDNDEPRRHQNDDFDENEHDETDERDDFEENFAPHGDNRRSFGVLGGSVKRLRRDQDHDDTHACGKSLSSHAHSQAQFAQADTAHLETEGMKGSTSQKQWMELRLLQLEDQKLQIQVEMLELEKQKFKWERFNKKKDRELEKMRMVNERMKLENERIALDLKQKEIGSGFH 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2938563 2939888 - CmoCh15G006040.1 Cmo15g00604 398112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00604 441 MobiDBLite consensus disorder prediction 269 285 - -
Cmo15g00604 441 MobiDBLite consensus disorder prediction 21 55 - -
Cmo15g00604 441 Gene3D - 121 192 - -
Cmo15g00604 441 Pfam Myb/SANT-like DNA-binding domain 118 243 IPR044822 -
Cmo15g00604 441 PANTHER FACTOR, PUTATIVE-RELATED 1 440 - -
Cmo15g00604 441 Coils Coil 373 395 - -
Cmo15g00604 441 Coils Coil 403 425 - -
Cmo15g00604 441 MobiDBLite consensus disorder prediction 269 314 - -
Cmo15g00604 441 MobiDBLite consensus disorder prediction 84 109 - -
Cmo15g00604 441 PANTHER F16F4.11 PROTEIN-RELATED 1 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00604 - - - csv:105435760 809.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02563 Cmo15g00604 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00430 Cmo-Chr6:2069513 Cmo15g00604 Cmo-Chr15:2938563 9.40E-79 dispersed
Cmo14g00250 Cmo-Chr14:1148283 Cmo15g00604 Cmo-Chr15:2938563 7.45E-82 dispersed
Cmo01g01054 Cmo-Chr1:8375871 Cmo15g00604 Cmo-Chr15:2938563 3.83E-13 transposed
Cmo15g00604 Cmo-Chr15:2938563 Cmo04g02563 Cmo-Chr4:18770153 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11153 PF13837 Myb_DNA-bind_4 6.60E-23 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00604 Cmo_Chr15 FPKM 9.307272 10.52509 13.534616 14.133192 14.353208 15.6532 15.840082 11.359235 11.340545 11.402783