Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00606 ATGCCTAAAGCGCAGCTCCGATCACCGACGACGCTGGTCCGATTCAAAGCGGTCGCCATTTCCGGTGGAAGAAGCAAACTAATCATCCCACTTCTACGACTCTACTTACACAGGCATTGGGATCCTAGGCTTTCTTCTCCTTATTCCCTCAAATGCTTCCTAAGGAACTTTTCTCTATGGTCAATGAAGAAAGACCCAGACCTTGAATCAGCTCTATCTCGTAATCGTCGATGGATTGTCAATAATCAAATCAAGAATATCGTCCTTCGTTGCCCCAATCAGACGGCACCTGTAAAATTTCTCCAAAAGAAGTTTAAAACCCTCGACTGTCAAGGAAAAGCCCTTAACTGGCTGAAAAAGTACCCCATCTGCTTTGAAGTTTATCTCCACAATGATGAGTACTATTTTCGGCTGACAAAGAGGATGATGGCTTTAGTTGAAGAGGAAGAAACTATCAAAGATATGCAGGAGCCTGCTTTTGTCGAGCGGTTGGCAAAGTTGCTGATGATGGCTTCGAATCAGAGACTAAATGTTTTAAAACTTGGTGAATTAAAGCGGATTTTTGGGCTCCCAGATGATTACTTGATAAGAATCGTTCCCAAACATTCAGATATGTTTCGAATTGTAAATTATACTGGAAAAAGAAACTCAATGGAAATAGAACTGGTCTCTTGGAAACCAGAACTAGCAATTTCCAGCATAGAATCTTCAGCCTGCAAGCATGGGGTTGAGCCAGCTTTCTCCTGCTCACTGCCAACGACTTGGGTAAATTCGTGGGAAAAGTTTCATGAATTTAATGCCTCTCCATATATTTCACCATATGCGAACCATGCAGGGTTGGTGAAAGATACAAAGGAGATGGAAAAGAGGACAGTGGGGTTGATCCATGAGATATTGTCGCTGACATTATGGAAGAAAGCATCAATTATGAAGCTTGGACATTTCAGCAGGGAATTCGGTCTGCCATTGAAGTTGAATGCGTTGCTGCTTAAGCACCCTGGCATATTCTATGTCTCAAACAAGTATCAGATTTACACTGTTCTTCTTAGAGAAGGGTATAATGGATCAGAACTAATTGAGAAAGATCCACTAGTGGTTGTAAAAGAGAAGTTTGGAGAACTGATGCAGGAGGGACTTCATGAATATAACAGGCGACATCATTTGATGAATTTAGAAAAGAAGAGAATGAAGGGGATGCTTTTGGGTAGATCAGAAAAGAACAAGAGGAAAGATTCTGAACCAGATGATCTTGATGATCAAGGAAACAATCTAGGAGGTTTACTTGAGCCAGAGGAAAGAAAAAGATTCTATCAGTCTCTCTTTGATGATGGTTCTGCATGA 1341 41.31 MPKAQLRSPTTLVRFKAVAISGGRSKLIIPLLRLYLHRHWDPRLSSPYSLKCFLRNFSLWSMKKDPDLESALSRNRRWIVNNQIKNIVLRCPNQTAPVKFLQKKFKTLDCQGKALNWLKKYPICFEVYLHNDEYYFRLTKRMMALVEEEETIKDMQEPAFVERLAKLLMMASNQRLNVLKLGELKRIFGLPDDYLIRIVPKHSDMFRIVNYTGKRNSMEIELVSWKPELAISSIESSACKHGVEPAFSCSLPTTWVNSWEKFHEFNASPYISPYANHAGLVKDTKEMEKRTVGLIHEILSLTLWKKASIMKLGHFSREFGLPLKLNALLLKHPGIFYVSNKYQIYTVLLREGYNGSELIEKDPLVVVKEKFGELMQEGLHEYNRRHHLMNLEKKRMKGMLLGRSEKNKRKDSEPDDLDDQGNNLGGLLEPEERKRFYQSLFDDGSA 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2944868 2947649 - CmoCh15G006060.1 Cmo15g00606 398114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00606 446 Pfam Plant organelle RNA recognition domain 63 378 IPR021099 GO:0003723
Cmo15g00606 446 MobiDBLite consensus disorder prediction 403 417 - -
Cmo15g00606 446 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 47 434 - -
Cmo15g00606 446 MobiDBLite consensus disorder prediction 403 431 - -
Cmo15g00606 446 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 47 434 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00606 - - - csv:101203802 733.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00550 Cmo-Chr9:2619532 Cmo15g00606 Cmo-Chr15:2944868 6.44E-38 dispersed
Cmo15g00606 Cmo-Chr15:2944868 Cmo17g01138 Cmo-Chr17:9263144 4.20E-58 dispersed
Cmo15g00606 Cmo-Chr15:2944868 Cmo17g00545 Cmo-Chr17:5539202 1.26E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1388 . . . . . . . . . Cmo15g00606 . . . . . . Cpe13g00681 Bhi04g01780 . . . . . . Cla08g00221 . Cec08g0008 Cco08g0293 . . Cre08g0194 . . . . . . . Cme03g00320 . . . . . . . . . . . . . . Car15g00555 . . . . . . . . . Cla09g00894 Cam09g0945 Cec09g0948 Cco09g0952 . . Cre09g0914 Lsi08g00552 . Chy03g00307 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005099 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00606 Cmo_Chr15 FPKM 2470.885498 2460.259521 1398.007202 1356.409912 834.511108 805.374268 739.086243 139.608551 155.834442 131.878494