Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00619 ATGGCAGATCCTTTTAGCTATGCAAATGCCGACCGTGATGTCGAGCAGGCATTAATTGCATTGAAGAAGGGTGCTCAACTGCTAAAATATGGTCGTAAAGGAAAGCCGAAGTTCTGTCCATTTAGGCTTTCTAGTGATGAATCGTCCTTGATCTGGATTTCAAGTAAGGGTGAAAGGAGTTTGAAGTTAGCTTCAATCTCACAAATTATACCTGGACAAAGAACTGCTGTCTTTGAACGATATCTTCGTCCAGAAAAGGATTACTTATCATTCTCTCTTATATACAACAACGGGAAGCGATCCCTCGATCTGATTTGTAAGGATAAAGCTGAGGCAGAGGCTTGGATTTCAGGCCTGAAAGCTTTAATTGCATCTGGTCAAGGTGGGCGTTCCAAAATTGATGGCTGGAGTGATGGAGGCCTCTATCTTGACGGAAGTTGTGAATTGACTTCAAATAGCCCGAGCGACAGTTCGCATAGCGTGAATAGAGACAATAGCTCTCCAGAAGTTTATGCAAGTTCGAACGCACATATATCTCTGAAGACTTCTCAACCTGAAAATTACATTGCAAAGTCTGAAAGAGCTCATGTATCATTAAACCAAACCAACATGCAAGTAAAAGGGTCTAGTTCTGATGTTATGCGAGTTAGTGTTTCAAGTGCTCCCAGCACTTCTAGTCATGGGTCTGCACCAGATGATTGTGATGCTCTAGGTGATGTATACATATGGGGTGAGATCGTTGGCGACAATATTGTGAAGATAGGGCCTGAAAGAAGTTACGTGACCTCGAGGACTGATGTACTTCTGCCAAGACCTTTGGAGTCTAACATTGTTCTAGACATACATCATATAGCCTGTGGGGTCAGGCATGCTGCCCTAGTGACAAGGCATGGGGAAATTTTTACATGGGGAGAGGAATCTGGAGGCCGCCTTGGCCATGGTGTGGTGAAGGATGTAATTCAACCTCGTATGGTTGAATCCTTGGCAGCTAGTAATATTGATTTTGTTGCTTGTGGGGAGTTCCATACATGTGCTGTTACAACGACAGGGGAACTTTATACATGGGGTGATGGTACCCATAATGCAGGGCTTCTTGGTCATGGCAGTGATGTCAGCCACTGGATACCAAAGAGAGTCTCTGGTCCACTTGAAGGACTTCAAGTTACTTCAGTGACATGCGGTCCATGGCATACAGCTCTGGTAACATCAATGGGTCAGCTTTTCACATTTGGTGATGGAACATTTGGTGCACTGGGCCATGGAGAAAGAGAAAATATTTCATATCCAAAAGAAGTGGAATCTTTATCAGGCCTGAGGACAATTGCTGTTGCATGTGGGGTGTGGCATACTGCCGCTGTAGTTGAAGTTATTGTGACACAATCTAGTTCAAGCATTTCATCGGGTAAACTGTTTACGTGGGGTGATGGAGATAAAAATCGTCTGGGGCATGGAGATAAGGAGCCCAGACTTAAACCCACATGTGTGCCGGCATTAATTGATTATGATTTTCACAAAGTTGCTTGCGGTCACAGCATAACTGTTGGTTTGACCACTTCAGGGCAAGTTTTCTCAATGGGAAGTACTGTGTATGGACAACTTGGGAATCCCAGTGCTGATGGAAAGATACCTTGCTTGGTAGAGGATAAGCTTTTTGGGGAATCCGTTGAAGAAGTTTCATCTGGTGCATATCATGTGGCGGTATTAACGTCCAAAAATGAAGTTTATACGTGGGGAAAGGGTGCAAACGGGAGATTGGGGCATGGTGATGTTGAAGATCGGAAGACACCAACTTTAGTTGAAGCTTTGAAGGACAGACATGTGAAATATATAGCATGTGGTTCAAATTACACAGCTGCCATTTGTCTTCACAAATGGGTTTCTAGTGCTGAGCAGTCACAGTGCTCTGCTTGCAGACAGGCGTTTGGGTTTACACGGAAGAGACACAACTGTTATAATTGTGGACTTGTGCACTGCCACTCTTGCAGTTCAAGAAAAGCATTAAGAGCAGCACTTGCACCTGATCCCGGAAAACCATATCGTGTATGTGATTCATGCTATGCAAAACTGATTAAGGCATTAGAAGCTAGTAATAACAATAGGAAAAATGCTATGCCTCGCATCTCAGGTGAGAACAAGGATAGGATTGACAAGGCTGATATGAGAATATCTAAGTCAGTGCCTTCCAATATGGACTTGATAAAGCAATTAGATAACAAAGCGGCTAAGCAAGGAAAGAAAGGCGATACCTTCTCCCTTGTTCGATCCTCTCAAGCCCCTCCACTATTGCAGTTTAGAGATGTTGTATTATCAACTGCTGTTGATCTGCGACGGACAGCTCCCAAACCAGTTGTCACTTCTTCTGGAGTAAGTTCTAGATCCGTTTCACCTTTTTCAAGGAAATCAAGCCCACCTCGATCTGCCACTCCTGTTCCCACAGCATCAGGACTTTCATTTTCCAAAAGCATAACTGATGGTTTGAAGAAAACAAATGATCTTTTGAATCACGAAGTGCTTAAATTACGTTCACAGGTTGAGAGCCTGAAGCAGAAATGTGAACATCAGGAACTGGAGCTTCAGAAATCTTTGAAGAAAACACGAGAAGCTATGGCCTTGGCTGCAGAGGAATCTGGTAAATCAAAAGCAGCCAAAGAAGTTATCAAGTTACTAACCGCTCAGCTTAAAGATATGGCTGAGAGGTTACCACCTGGAGTATATGATGCTGAGAAAATGAGATCAGTTCATCTTTCAAATGGTTTGGAGTCAAATGGTGTATACCATTTGAGTATGAACGGAGAGCGTCATTCACGATCTGATTCACTTAGCAGCTACTCCTGTGCATCTCCCACGGCATCTGATGCTGTTGCTTGGCCGGGAAGCTATGGCACAGCTCATTCATCCAGGGATCTTTCTGGAATGAATGAAAATATTCGGCAACAAGATAGAATTGACAGTCGAGATTCTAGACTTCCAAATAGTGGAGGGTCTCAGCCAGTTAACAGTAGTGCATTGGTTGCAGCTGTTGGCAAGGAGTCTGAGTCTTTACAAGATGGTGACAATAATTCCAGAGCCAAAACTTCTGTACTGGCTAATGCCACTCAAGTTGAGGCTGAATGGATTGAACAATATGAGCCTGGTGTATATATTACTCTTGTGGCTCTGCGTGATGGTACTCGGGATCTAAAACGTGTGCGCTTCAGCCGGAGAAGATTTGGAGAGCATCAAGCAGAAAACTGGTGGTCAGAGAACCGTGAGAAGGTATATGAGAGATATAACGTTCGCAGCTCGGACAAGTCTTCAGTTTCGGGACTGTCGTCACAGAGGGCTGATGATGCAGTTTCAATAGCTTCCCAGCAACTATAG 3360 43.93 MADPFSYANADRDVEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDESSLIWISSKGERSLKLASISQIIPGQRTAVFERYLRPEKDYLSFSLIYNNGKRSLDLICKDKAEAEAWISGLKALIASGQGGRSKIDGWSDGGLYLDGSCELTSNSPSDSSHSVNRDNSSPEVYASSNAHISLKTSQPENYIAKSERAHVSLNQTNMQVKGSSSDVMRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEIVGDNIVKIGPERSYVTSRTDVLLPRPLESNIVLDIHHIACGVRHAALVTRHGEIFTWGEESGGRLGHGVVKDVIQPRMVESLAASNIDFVACGEFHTCAVTTTGELYTWGDGTHNAGLLGHGSDVSHWIPKRVSGPLEGLQVTSVTCGPWHTALVTSMGQLFTFGDGTFGALGHGERENISYPKEVESLSGLRTIAVACGVWHTAAVVEVIVTQSSSSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIDYDFHKVACGHSITVGLTTSGQVFSMGSTVYGQLGNPSADGKIPCLVEDKLFGESVEEVSSGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYTAAICLHKWVSSAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPDPGKPYRVCDSCYAKLIKALEASNNNRKNAMPRISGENKDRIDKADMRISKSVPSNMDLIKQLDNKAAKQGKKGDTFSLVRSSQAPPLLQFRDVVLSTAVDLRRTAPKPVVTSSGVSSRSVSPFSRKSSPPRSATPVPTASGLSFSKSITDGLKKTNDLLNHEVLKLRSQVESLKQKCEHQELELQKSLKKTREAMALAAEESGKSKAAKEVIKLLTAQLKDMAERLPPGVYDAEKMRSVHLSNGLESNGVYHLSMNGERHSRSDSLSSYSCASPTASDAVAWPGSYGTAHSSRDLSGMNENIRQQDRIDSRDSRLPNSGGSQPVNSSALVAAVGKESESLQDGDNNSRAKTSVLANATQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAENWWSENREKVYERYNVRSSDKSSVSGLSSQRADDAVSIASQQL 1119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3006392 3015893 - CmoCh15G006190.1 Cmo15g00619 398127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Cmo15g00619 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1098 - -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 202 231 - -
Cmo15g00619 1119 Pfam FYVE zinc finger 624 689 IPR000306 GO:0046872
Cmo15g00619 1119 ProSiteProfiles PH domain profile. 91 124 IPR001849 -
Cmo15g00619 1119 Gene3D - 361 459 IPR009091 -
Cmo15g00619 1119 Gene3D - 157 360 IPR009091 -
Cmo15g00619 1119 SUPERFAMILY RCC1/BLIP-II 237 625 IPR009091 -
Cmo15g00619 1119 CDD FYVE_like_SF 633 686 - -
Cmo15g00619 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 202 230 - -
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 979 1000 - -
Cmo15g00619 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Cmo15g00619 1119 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 783 819 - -
Cmo15g00619 1119 CDD PH_PLC_plant-like 12 124 - -
Cmo15g00619 1119 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1098 - -
Cmo15g00619 1119 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 350 400 IPR000408 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Cmo15g00619 1119 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Cmo15g00619 1119 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Cmo15g00619 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 636 696 IPR013083 -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 954 973 - -
Cmo15g00619 1119 Gene3D - 460 635 IPR009091 -
Cmo15g00619 1119 SMART fyve_4 623 691 IPR000306 GO:0046872
Cmo15g00619 1119 SUPERFAMILY PH domain-like 13 123 - -
Cmo15g00619 1119 Gene3D - 13 129 IPR011993 -
Cmo15g00619 1119 Coils Coil 879 899 - -
Cmo15g00619 1119 Coils Coil 830 864 - -
Cmo15g00619 1119 SUPERFAMILY FYVE/PHD zinc finger 624 699 IPR011011 -
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Cmo15g00619 1119 Pfam Transcription factor BRX N-terminal domain 874 909 IPR027988 -
Cmo15g00619 1119 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Cmo15g00619 1119 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Cmo15g00619 1119 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Cmo15g00619 1119 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Cmo15g00619 1119 MobiDBLite consensus disorder prediction 781 819 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00619 - - - csv:116404564 2024.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01025 Cmo15g00619 CCT
Cmo04g02551 Cmo15g00619 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01130 Cmo-Chr14:7933885 Cmo15g00619 Cmo-Chr15:3006392 0 dispersed
Cmo15g00619 Cmo-Chr15:3006392 Cmo20g00111 Cmo-Chr20:566115 0 dispersed
Cmo20g00110 Cmo-Chr20:565062 Cmo15g00619 Cmo-Chr15:3006392 6.14E-12 dispersed
Cmo01g01339 Cmo-Chr1:10624404 Cmo15g00619 Cmo-Chr15:3006392 1.24E-14 transposed
Cmo15g00619 Cmo-Chr15:3006392 Cmo04g02551 Cmo-Chr4:18693764 0 wgd
Cmo15g00619 Cmo-Chr15:3006392 Cmo09g01105 Cmo-Chr9:6215159 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00619 Cmo_Chr15 FPKM 2.667302 2.043022 0.067925 0.004854 0.0 0.0 0.340571 0.110591 0.239907 0.101111