Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00631 ATGAGGCTGTTGGGAGGGATGGAGCGGGGGAGAAGAACTCTTGGGGCTGCTTGGGGGTGCTTTTTCATTGCCTTGTGGGTGGCCACGCAGGGGTTCCCGGTCGAGGATCTCGTCGGGAGGCTCCCCGGCCAACCATCGGTCAATTTTAGACAATTTGCAGGTTACGTCGATGTCGACGTCGACGCGGGAAGAAGTTTGTTTTACTATTTTGCTGAAGCTCAGAAAGATCCCCATCTCCTGCCCCTCACTCTCTGGCTCAATGGAGGTCCAGGTTGCTCGTCTGTTGGTGGGGGTGCCTTTACAGAGTTGGGGCCCTTTTATCCCAGAGGTGATGGCCGAGGCCTTCGAAGAAACTCCATGTCCTGGAATAAAGCCTCGAATCTGCTGTTTGTGGAGTCTCCTGTGGGGGTAGGATGGTCATACTCAAACACAACGTCAGACTACACTTGTGGTGATGACTCCACAGCCAGGGACATGCTCACCTTTATGTTGAAATGGTATGACAAGTTTCCAGCTTTCAGAGATAGCTCATTTTTCCTCACAGGAGAAAGTTATGCAGGCCATTACATTCCTCAGCTAGCTGAAGCAATGCTGGACTATAACATTCACTCAAAGGGCTTCAAGTTCAATATCAAGGGAGTTGCTCTTGGGAACCCATTACTTAATCTGGACAGGGATGTCCCAGCAACCTACGAGTTCTTTTGGTCTCATGGCATGATTTCCGACGAGGTTTGGTTTGCAATCAATAGAGACTGTGATTTTGATGATTATCTGTTGACTACTCCACACAATGTAACCAAATCCTGCATCCAAGCCATCGCCGACGCCAACGGTATTGTTAGCGAGTACATAAACACCTACGATGTTCTTTTGGATGTCTGCTACCCCTCCATTGTCCAGCAAGAGCTGAGATTGAAGAAACTGGCGACTAAAATAAGCATGGGAATTGATGTGTGCATGACCCAAGAAAGGCGTTTCTATTTCAATTTACCAGAAGTTCAAAAGGCTCTTCATGCTAATCGTACTAACTTGCCTCATCAATGGTTCATGTGCAGTGACTTAGTAGATTATAATTACAATGATACGAACATCAACATGCTTCCCGCGCTGAAGAGAATAATCCAAAACCACATCCCGATTTGGATCTTCAGTGGGGATGAGGATTCAGTGGTGCCATTGATGGGGTCTAGGACGCTAGTCCGAGAGTTGGCTCATGACCTTAAATTCAAGATCACAGTACCCTACGGAGCTTGGTTTCACAAGGGCCAAGTCGGGGGCTGGGCCATCGAGTACGGTAATATACTGACATACGCAACGGTGCGTGGGGCAGCTCATATGGTGCCCTACGCTCAGCCCTCAAGAGCTCTGCATTTGTTCTCTTCATTTGTAAGAGGGAGGAGGCTGCTCAATTCTACCCGCCCTTCCATCGACGATTGA 1437 48.57 MRLLGGMERGRRTLGAAWGCFFIALWVATQGFPVEDLVGRLPGQPSVNFRQFAGYVDVDVDAGRSLFYYFAEAQKDPHLLPLTLWLNGGPGCSSVGGGAFTELGPFYPRGDGRGLRRNSMSWNKASNLLFVESPVGVGWSYSNTTSDYTCGDDSTARDMLTFMLKWYDKFPAFRDSSFFLTGESYAGHYIPQLAEAMLDYNIHSKGFKFNIKGVALGNPLLNLDRDVPATYEFFWSHGMISDEVWFAINRDCDFDDYLLTTPHNVTKSCIQAIADANGIVSEYINTYDVLLDVCYPSIVQQELRLKKLATKISMGIDVCMTQERRFYFNLPEVQKALHANRTNLPHQWFMCSDLVDYNYNDTNINMLPALKRIIQNHIPIWIFSGDEDSVVPLMGSRTLVRELAHDLKFKITVPYGAWFHKGQVGGWAIEYGNILTYATVRGAAHMVPYAQPSRALHLFSSFVRGRRLLNSTRPSIDD 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3056255 3059502 + CmoCh15G006310.1 Cmo15g00631 398139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00631 478 Gene3D - 366 465 - -
Cmo15g00631 478 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Cmo15g00631 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 468 IPR001563 GO:0004185|GO:0006508
Cmo15g00631 478 PANTHER CARBOXYPEPTIDASE 27 468 - -
Cmo15g00631 478 SUPERFAMILY alpha/beta-Hydrolases 37 468 IPR029058 -
Cmo15g00631 478 Pfam Serine carboxypeptidase 43 465 IPR001563 GO:0004185|GO:0006508
Cmo15g00631 478 Gene3D - 319 356 - -
Cmo15g00631 478 Gene3D alpha/beta hydrolase 34 295 IPR029058 -
Cmo15g00631 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Cmo15g00631 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Cmo15g00631 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Cmo15g00631 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 435 448 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00631 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - csv:101207193 880.937
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo09g01099 Cmo15g00631 CCT
Cmo04g02540 Cmo15g00631 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01439 Cmo-Chr14:11703878 Cmo15g00631 Cmo-Chr15:3056255 3.44E-129 dispersed
Cmo15g00631 Cmo-Chr15:3056255 Cmo01g00481 Cmo-Chr1:2292473 2.34E-117 dispersed
Cmo20g01018 Cmo-Chr20:6667357 Cmo15g00631 Cmo-Chr15:3056255 6.60E-10 dispersed
Cmo15g00631 Cmo-Chr15:3056255 Cmo04g02540 Cmo-Chr4:18651098 0 wgd
Cmo15g00631 Cmo-Chr15:3056255 Cmo09g01099 Cmo-Chr9:6097855 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00631 Cmo_Chr15 FPKM 22.020903 22.696114 20.741648 21.847816 22.857178 23.653835 21.19496 28.191725 25.087725 24.636517