Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00634 ATGCCTCGTCGCAGGGATGACGACGATGACGACGACATTGACGCCGATGAGGAAGAGTATGAGGAGGAGATGGAACAGCCTCTGGATGACGAGGATGAAGAGGAAGATCGTTCGAGTAGGAAGCGGCGGAGATCAAATTTTATAGATGACGCTGCGGAGGAGGATGAGGACGAGGAGGAAGAAGAAGAGGATGACGATGATGAAGATTTTGGTGGCGGTGGTCGGCGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGATATTGAGGCGGAGGTCGATAGCGATGACGATGAAGAGGACGACGATGGAGAGGACGATTTTATTGTTGATAATGGAGCTGATATACCCGATGAAGATGAAAATAGAAGGATGCATCGCCGCCCATTGCTACCACGGGAGGATGAACAGGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCAAGATATGCAAGATCAAATCATATGGAATATGACGAGGAGACCACAGAAGTGGAGCAGCAAGCTCTCTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAGATGCGCGATTGGCCGAGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATTGATAGAGGGCCTGAAATGCAAATAAGATCTGCAGTTGCTCTTGACCATTTGAAGAACTATATATATATTGAAGCTGACAAAGAGGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATGTACGCACAAAAGATAACACTCGTTCCAATTAAAGAAATGACGGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTGCTAGAGATACATGGGTTAGGCTGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGACAATGTGCGGCAGAGGGTTACTGTGAAACTGATTCCACGGATAGACCTACAGGCTCTTGCAATTAAATTGGAAGGGAGAGAAGTTGCTAAAAAGAAGGCATTTGTTCCTCCACCGCGATTTATGAATATTGATGAAGCTAGTAACTTACTCTTCGACATATTCAGAGAGTTGCACATCCGTGTGGAGCGCAGACGTGATCCCATTACTGGAGAATACTTTGAGAATATAGGTGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAATGTCCATGAAGTCGATAAATGCCCAAAACATAAAGCCGACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGTTTGTCTACGTTGTTTGCGAATCGAAAGAAAGGGCACTTTATGAAAGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTTGAGAAAGTAGAGGAAGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCCAAAACACTTGCGGTGAATGAAAGAGAACTTTGCAAGTACTTCGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTAAAGGTGGATCAACATGTGCTTATTATATTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCCGAGGTAACAACTGGCGTGACTAGAATTGGGGATTATGAACTTCACGATCTTGTGTTATTGGATAATATGAGCTTTGGCGTAATTATCCGTGTAGAAAGTGAGGCTTTCCAGGTTCTTAAGGGTATTCCTGATAGACCTGAGGTTGATATTGTGAAGTTAAGGGAAATAAAAAGTAAGATTGACAAGAAAATCAGTGTTCAAGATCGGTTCAATAACACAATTTCCTCCAAAGACGTAGTGAGGATTCTTGAAGGACCTTGTAAGGGAAAACAAGGTCCAGTGGAGCACATATACAGAGGAATTCTGTTTGTTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGCTAAATCACAGGCTTGTGTTGTTGTGGGTGGATCCCGAACTAATGGAAATAGAAATGGTAAGTCATATTCTAGGTTTGCTGGCCTTGGGACCCCACCTCGTTTTCCTCAGTCACCTAAGAGATTTCCTAGAGGAGGCCCTCCCAATAATGGCGGGGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACAGTAAAAGTTCGGCTGGGTCCTTATAAGGGTTACCGTGGACGTGTTGTTGAAATAAAAGGCCAAATGGTTCGAGTAGAGCTCGAGTCTCAAATGAAAGTGGTCACAGGCATTTCAAGGTTTTACTGTTTTCTTTGTACCAGTGAATCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGTACTCCCCTGCATCCATACATGATCTCAATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGGACACCTATGCGAGATCGAGCATGGAATCCCTATGCACCCATGATTATTTTCTTTCTCCCCTTAAGTCTCATCAATGAACTATGGGTTAGGGAAGCTAGAATAAAGAGACGTTGGACAAGATGTGGTTTGTCATCTTTCAGAAGGCAGGCAATCATATTTGATACATTTTCACCATCACCTTCTGACAGTGACAAGTTATTTGGTGTGAGTGGTGGTAGTGCAATAGTGAAGTCCTGTACCTGGCCTACCCTGGAGGCAATTGTGATGGGGCTTGTGTTGAACTCATTTGATGTGGTAACCACCTTTGGCTGTGGGATAAATTTGTCTCATACATCAGTAACTTTAGAGCTTCTTGATATGTTATGCTGTATCTCCGTTTTTCATCATGGAGCCATCTTATCCATTGAAGTCCTCTTTTTCAAGGATAACTGGGAGGAAGGGAATCCTGCAACTTGGGGAAGTAGCCCACAGTACCAGACAGGAAGCCCTCCTTCACGGACATATGAAGCTCCAACTCCGGGTTCTGGGTGGGCCAACACTCCTGGTGGCAGTTACAGTGATGCTGGTACCCCCCGGGATGGTGGTTCAGCCTATGCAAATGCTCCAAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCGATGACACCTAATCCAGCCTCCTATCTTCCCGGTACTCCTGGTGGGCAGCCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATTCCGAAGGACCATGGTACATGCCAGACATATTAGTCAATGTCCGGAGGTCAGGAGATGAGCTCGTCAAGGGAGTAATCCGTGAGGTGCTTCCGGGCCCACCCCATCCTTATCCTTCATTTATTTGTAATGATGGCGGATGTAGGGTAGGTCTTGGATCAAGTGGAAATGGCGAAACGGTAACAGCCTCTTCCAGCGAAATAGAAGTGATCGTTCCTAGAAAGTCAGACAAGATCAAGATAATGGGTGGTGCACTGCGTGGTGCCACTGGCAAATTGATCGGCGTAGACGGCACGGATGGAATTGTGAAGGTAGATGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCAAAACTAGCTCAACCATAA 3537 45.07 MPRRRDDDDDDDIDADEEEYEEEMEQPLDDEDEEEDRSSRKRRRSNFIDDAAEEDEDEEEEEEDDDDEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDDGEDDFIVDNGADIPDEDENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVRCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNYIYIEADKEAHVREACKGLRNMYAQKITLVPIKEMTDVLSVESKAIDLARDTWVRLKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALAIKLEGREVAKKKAFVPPPRFMNIDEASNLLFDIFRELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTMSMKSINAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFVYDRHHLEHAGFICAKSQACVVVGGSRTNGNRNGKSYSRFAGLGTPPRFPQSPKRFPRGGPPNNGGGRHRGGRGHHDGLVGSTVKVRLGPYKGYRGRVVEIKGQMVRVELESQMKVVTGISRFYCFLCTSESSRYGMGSETPMHPSRTPLHPYMISMRDIGTTPIHDGMRTPMRDRAWNPYAPMIIFFLPLSLINELWVREARIKRRWTRCGLSSFRRQAIIFDTFSPSPSDSDKLFGVSGGSAIVKSCTWPTLEAIVMGLVLNSFDVVTTFGCGINLSHTSVTLELLDMLCCISVFHHGAILSIEVLFFKDNWEEGNPATWGSSPQYQTGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDGGSAYANAPSPYLPSTPGGQPMTPNPASYLPGTPGGQPMTPGTGGLDMMSPVIGGDSEGPWYMPDILVNVRRSGDELVKGVIREVLPGPPHPYPSFICNDGGCRVGLGSSGNGETVTASSSEIEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3063254 3074901 - CmoCh15G006340.1 Cmo15g00634 398142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00634 1178 PIRSF Spt5 2 820 IPR017071 GO:0006357|GO:0032784
Cmo15g00634 1178 PIRSF Spt5 945 1178 IPR017071 GO:0006357|GO:0032784
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 51 69 - -
Cmo15g00634 1178 ProSitePatterns Ribosomal protein L24 signature. 433 450 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cmo15g00634 1178 SUPERFAMILY Translation proteins SH3-like domain 473 532 IPR008991 -
Cmo15g00634 1178 PANTHER SUPPRESSOR OF TY 5 27 818 IPR039659 GO:0006357|GO:0032784
Cmo15g00634 1178 CDD KOW_Spt5_4 609 651 IPR041977 -
Cmo15g00634 1178 PANTHER SUPPRESSOR OF TY 5 946 1176 IPR039659 GO:0006357|GO:0032784
Cmo15g00634 1178 CDD NGN_Euk 180 262 IPR039385 -
Cmo15g00634 1178 Gene3D - 269 325 IPR014722 -
Cmo15g00634 1178 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 946 1176 - -
Cmo15g00634 1178 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 27 818 - -
Cmo15g00634 1178 SMART kow_9 605 632 IPR005824 -
Cmo15g00634 1178 SMART kow_9 1125 1152 IPR005824 -
Cmo15g00634 1178 SMART kow_9 269 296 IPR005824 -
Cmo15g00634 1178 SMART kow_9 712 739 IPR005824 -
Cmo15g00634 1178 SMART kow_9 429 456 IPR005824 -
Cmo15g00634 1178 SMART kow_9 481 508 IPR005824 -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 668 715 - -
Cmo15g00634 1178 Gene3D - 697 754 IPR014722 -
Cmo15g00634 1178 Pfam KOW motif 715 746 IPR005824 -
Cmo15g00634 1178 Pfam KOW motif 484 511 IPR005824 -
Cmo15g00634 1178 CDD KOW_Spt5_3 481 531 IPR041976 -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 91 116 - -
Cmo15g00634 1178 Pfam Early transcription elongation factor of RNA pol II, NGN section 180 261 IPR005100 -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 9 33 - -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 955 1041 - -
Cmo15g00634 1178 Coils Coil 134 154 - -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 955 991 - -
Cmo15g00634 1178 Gene3D - 424 481 IPR014722 -
Cmo15g00634 1178 CDD KOW_Spt5_1 273 310 IPR041973 -
Cmo15g00634 1178 Gene3D - 484 533 IPR014722 -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 34 50 - -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 1 142 - -
Cmo15g00634 1178 MobiDBLite consensus disorder prediction 117 142 - -
Cmo15g00634 1178 Gene3D - 160 262 IPR036735 GO:0006355
Cmo15g00634 1178 CDD KOW_Spt5_6 1119 1176 IPR041980 -
Cmo15g00634 1178 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 174 IPR022581 -
Cmo15g00634 1178 CDD KOW_Spt5_5 712 753 IPR041978 -
Cmo15g00634 1178 SMART nusgn_4 178 264 IPR006645 GO:0140673
Cmo15g00634 1178 CDD KOW_Spt5_2 430 480 IPR041975 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00634 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1335.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02539 Cmo15g00634 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00043 Cmo-Chr2:227364 Cmo15g00634 Cmo-Chr15:3063254 1.59E-06 dispersed
Cmo04g02668 Cmo-Chr4:19400700 Cmo15g00634 Cmo-Chr15:3063254 2.63E-19 dispersed
Cmo15g00509 Cmo-Chr15:2338712 Cmo15g00634 Cmo-Chr15:3063254 9.87E-27 dispersed
Cmo15g00634 Cmo-Chr15:3063254 Cmo04g02539 Cmo-Chr4:18640122 7.64E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00634 Cmo_Chr15 FPKM 7.581893 8.901029 7.435603 7.59981 19.316715 18.918354 17.863256 2.839176 2.287829 3.114724