Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00639 ATGGCAACATCGGGGCCACCCACCCCTATGGGTGGCGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTAATTCTGGATTGATAGGAATTCAAGGTGGTCTGCAGCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCTCGCAATCAGTTCAATAATATGAATATGGTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAGTAGCCACACTGGTGCGGAGCCAGATCCCCTTTCCGGTGTTGGCAATGGAACGAGCTTTAATAATCCTTCATCATCATTTGTAGCATCAAATATGACAAACCCTGTTTCGTCCGTTCAGGGGCATAATCCACAATTTTCTAACCTTTCTAGCAGTCAGATGTCATCAGATCAACAGCAGTCGCAACAGCTAGAGCCCCAGAACTTCCAACATAGTCAACAGTCGATGGAACAGTTTTCTGCACACCAGAGCAATCAACAACCACAATTTCATGCAATTCGAGGGTTGAATGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCAACTTGGACAGCAGCAGCAGCAGCATTTGCAAACGTTGAGAAACCTTGTTCCTGTGAAATTGGAATCACAACGACTTCAGTCACTGAGAGGTTTGACACCAGTAAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCATCAACTACAACAACCACAATCGCAACAATTTCTCCATATGTCTAGACAGCCCTCTCAGGCAGCGGCTGCCCAAATTAATCTAATGCACCAACAAAGGCTTTTGCAATTGCAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTATCAACAGCAGAACCTTTCTCTGAGATCTCCTGTAAAACCAGGATATGAACCTGGAATGTGTGCCCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAATATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCCCATGCCAAGAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGACTTTTTAAGATCAAGTATGAAAGTGGTACAATGGAGGAACTACTGTACCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCCTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGAATTGTTTTTTCTCCGGACCTTAAGATATGCTCATGGGAATTCTGTGCTCGACGCCATGAGGAACTTATACCTAGGAGATTATTGATACCTCAGGTTAGCCACCTTGGAGCGGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCAACTCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTACAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAGCAAGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGTGCTTACAAATCATGCTCAAGTTTCTAATGAGCAGCAACAACAGCAATCATCCATAGCCCATCACTCAAATAACAACCAGGGTTCTGTTCAGGCTTCTGCAGTGCAGCTTACGGGTAGCAATGGCGTGGCCAATGTAAATAACATGGCCAACCAACCCTCAACATCAAACTCAGCGAGCACCATTGCTGGGCTTCTTCACCAGAATTCTATTAATTCCAGACAGCAGAACTCTATGGCTGATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCTTCCAGTACAATTCCACCTACGCAACTGAACCCTTCTACATTCCAGCCACCGACACCTTCATCATCTAACAATCTTTCACAACCATCGCATGCAGCTGTGAGGAATGGCAATCAGATGAGTGCTGCTAATTCTCCGGCAAATGTCTCTATACAACAACCTGCCTTATCTGGAGATGCTGATCCTAGTGATACACAGTCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCAAATGAATAGTCCAACAAGTCTGGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAATCCAGGTCTCAACAACGGGAATTGTATTGGGGGAAACGGAGCAACCAACAGTGGCTCAGGAATGGGAGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGTCAGCCTGCCATGGTTAATGGAATGAGGACTGCAATGGGAAATAACTCCATTATGAACAGACGAATAGGAATGGCATCGCTCGCTCTTGAACAAAGCATGAATGGTCAACAACCGCAGGATATGGGAAACCAGCTTCTTAGTGGACTAGGAGCTGTGAATGGTTTTACAGCATTCAAATTACCAGAATTTGCCGATGGCCCTGCGAGAGATGGCAGGCACCGCATGGCAAAACAGGTACGGGGCATAATGATTCACACTTTGTACCTATATATTTGCTTTTATATTATACGAAAAGGAAAGTCTGACGGCTGGTGA 2841 44.98 MATSGPPTPMGGGAQSVSPSLLRSNSGLIGIQGGLQPSQAAFSSLVSPRNQFNNMNMVGNMSNVSSLLNQSFGNGAPNSGLPCPGSSHTGAEPDPLSGVGNGTSFNNPSSSFVASNMTNPVSSVQGHNPQFSNLSSSQMSSDQQQSQQLEPQNFQHSQQSMEQFSAHQSNQQPQFHAIRGLNGVGPVKLEPQVTSNDQLGQQQQQHLQTLRNLVPVKLESQRLQSLRGLTPVKMEPQQSDQSLFLQQQQQQQQHQLQQPQSQQFLHMSRQPSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKEARIGPMDSLAKFPRRTSSSSVLTNHAQVSNEQQQQQSSIAHHSNNNQGSVQASAVQLTGSNGVANVNNMANQPSTSNSASTIAGLLHQNSINSRQQNSMADASNSYGGSSVQIPSPGSSSTIPPTQLNPSTFQPPTPSSSNNLSQPSHAAVRNGNQMSAANSPANVSIQQPALSGDADPSDTQSSVQKILQEMMMNNQMNSPTSLVGVGSVVNDMKNVNGVLPTSNPGLNNGNCIGGNGATNSGSGMGGGGYGSMGSGLGQPAMVNGMRTAMGNNSIMNRRIGMASLALEQSMNGQQPQDMGNQLLSGLGAVNGFTAFKLPEFADGPARDGRHRMAKQVRGIMIHTLYLYICFYIIRKGKSDGW 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3096562 3102876 + CmoCh15G006390.1 Cmo15g00639 398147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00639 946 PANTHER LIM DOMAIN-BINDING PROTEIN 1 901 IPR029005 -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 99 172 - -
Cmo15g00639 946 Pfam LIM-domain binding protein 337 591 IPR029005 -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 676 731 - -
Cmo15g00639 946 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 1 901 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 1 21 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 306 328 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 234 271 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 590 632 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 306 323 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 78 172 - -
Cmo15g00639 946 MobiDBLite consensus disorder prediction 594 632 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02535 Cmo15g00639 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01061 Cmo-Chr1:8524802 Cmo15g00639 Cmo-Chr15:3096562 0 dispersed
Cmo04g02533 Cmo-Chr4:18609707 Cmo15g00639 Cmo-Chr15:3096562 2.10E-06 dispersed
Cmo09g01076 Cmo-Chr9:5826816 Cmo15g00639 Cmo-Chr15:3096562 0 dispersed
Cmo15g00639 Cmo-Chr15:3096562 Cmo15g01487 Cmo-Chr15:10080984 1.73E-113 dispersed
Cmo15g00639 Cmo-Chr15:3096562 Cmo04g02535 Cmo-Chr4:18611539 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00639 - - csv:101218018 1401.73