Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00639 | ATGGCAACATCGGGGCCACCCACCCCTATGGGTGGCGGTGCACAGTCTGTTTCACCCTCACTTCTGCGATCTAATTCTGGATTGATAGGAATTCAAGGTGGTCTGCAGCCTTCTCAGGCAGCCTTTTCTTCACTTGTATCGCCTCGCAATCAGTTCAATAATATGAATATGGTTGGTAATATGTCCAATGTGTCATCTCTCCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACTTCCATGTCCTGGCAGTAGCCACACTGGTGCGGAGCCAGATCCCCTTTCCGGTGTTGGCAATGGAACGAGCTTTAATAATCCTTCATCATCATTTGTAGCATCAAATATGACAAACCCTGTTTCGTCCGTTCAGGGGCATAATCCACAATTTTCTAACCTTTCTAGCAGTCAGATGTCATCAGATCAACAGCAGTCGCAACAGCTAGAGCCCCAGAACTTCCAACATAGTCAACAGTCGATGGAACAGTTTTCTGCACACCAGAGCAATCAACAACCACAATTTCATGCAATTCGAGGGTTGAATGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACCAGCAATGATCAACTTGGACAGCAGCAGCAGCAGCATTTGCAAACGTTGAGAAACCTTGTTCCTGTGAAATTGGAATCACAACGACTTCAGTCACTGAGAGGTTTGACACCAGTAAAAATGGAACCCCAACAATCGGACCAGTCATTATTTCTGCAGCAGCAGCAGCAGCAGCAGCAGCATCAACTACAACAACCACAATCGCAACAATTTCTCCATATGTCTAGACAGCCCTCTCAGGCAGCGGCTGCCCAAATTAATCTAATGCACCAACAAAGGCTTTTGCAATTGCAACAACAACATCAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGGCCACAATTGCAACAACATTATCAACAGCAGAACCTTTCTCTGAGATCTCCTGTAAAACCAGGATATGAACCTGGAATGTGTGCCCGGCGTCTGACTCATTACATGTATCACCAGCAACACAGACCTGAAGACAACAATATAGATTTCTGGAGGAAATTTGTTAACGAGTACTTTGCACCCCATGCCAAGAAGAAGTGGTGCGTTTCCATGTATGGAAGTGGGCGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGCAATCGCAAGCCTGGGCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGACTTTTTAAGATCAAGTATGAAAGTGGTACAATGGAGGAACTACTGTACCTTGACATGCCTCGTGAATATCATAATGCATCTGGTCAGATTGTCCTGGATTATGCAAAAGCGATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGCGATGGCCAACTTCGAATTGTTTTTTCTCCGGACCTTAAGATATGCTCATGGGAATTCTGTGCTCGACGCCATGAGGAACTTATACCTAGGAGATTATTGATACCTCAGGTTAGCCACCTTGGAGCGGCAGCTCAAAAGTACCAGTCTGCCATTCAAAACGCATCATCCAATTTATCAACTCCTGAATTGCAAAACAATTGTAACATGTTTGTGGCTTCAGCACGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACAAAGAGATACGTACGTTGTCTACAGATATCCGAAGTGGTTAATAGCATGAAGGACTTGATTGATTACAGCAAAGAAGCAAGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGTGCTTACAAATCATGCTCAAGTTTCTAATGAGCAGCAACAACAGCAATCATCCATAGCCCATCACTCAAATAACAACCAGGGTTCTGTTCAGGCTTCTGCAGTGCAGCTTACGGGTAGCAATGGCGTGGCCAATGTAAATAACATGGCCAACCAACCCTCAACATCAAACTCAGCGAGCACCATTGCTGGGCTTCTTCACCAGAATTCTATTAATTCCAGACAGCAGAACTCTATGGCTGATGCTAGCAACTCATATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCTTCCAGTACAATTCCACCTACGCAACTGAACCCTTCTACATTCCAGCCACCGACACCTTCATCATCTAACAATCTTTCACAACCATCGCATGCAGCTGTGAGGAATGGCAATCAGATGAGTGCTGCTAATTCTCCGGCAAATGTCTCTATACAACAACCTGCCTTATCTGGAGATGCTGATCCTAGTGATACACAGTCCTCCGTGCAAAAGATCTTACAAGAGATGATGATGAATAATCAAATGAATAGTCCAACAAGTCTGGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAACGTGAATGGGGTCTTACCTACAAGTAATCCAGGTCTCAACAACGGGAATTGTATTGGGGGAAACGGAGCAACCAACAGTGGCTCAGGAATGGGAGGAGGTGGATATGGATCAATGGGGAGTGGGCTTGGTCAGCCTGCCATGGTTAATGGAATGAGGACTGCAATGGGAAATAACTCCATTATGAACAGACGAATAGGAATGGCATCGCTCGCTCTTGAACAAAGCATGAATGGTCAACAACCGCAGGATATGGGAAACCAGCTTCTTAGTGGACTAGGAGCTGTGAATGGTTTTACAGCATTCAAATTACCAGAATTTGCCGATGGCCCTGCGAGAGATGGCAGGCACCGCATGGCAAAACAGGTACGGGGCATAATGATTCACACTTTGTACCTATATATTTGCTTTTATATTATACGAAAAGGAAAGTCTGACGGCTGGTGA | 2841 | 44.98 | MATSGPPTPMGGGAQSVSPSLLRSNSGLIGIQGGLQPSQAAFSSLVSPRNQFNNMNMVGNMSNVSSLLNQSFGNGAPNSGLPCPGSSHTGAEPDPLSGVGNGTSFNNPSSSFVASNMTNPVSSVQGHNPQFSNLSSSQMSSDQQQSQQLEPQNFQHSQQSMEQFSAHQSNQQPQFHAIRGLNGVGPVKLEPQVTSNDQLGQQQQQHLQTLRNLVPVKLESQRLQSLRGLTPVKMEPQQSDQSLFLQQQQQQQQHQLQQPQSQQFLHMSRQPSQAAAAQINLMHQQRLLQLQQQHQQQHLLKSMPPQRPQLQQHYQQQNLSLRSPVKPGYEPGMCARRLTHYMYHQQHRPEDNNIDFWRKFVNEYFAPHAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTMEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKEARIGPMDSLAKFPRRTSSSSVLTNHAQVSNEQQQQQSSIAHHSNNNQGSVQASAVQLTGSNGVANVNNMANQPSTSNSASTIAGLLHQNSINSRQQNSMADASNSYGGSSVQIPSPGSSSTIPPTQLNPSTFQPPTPSSSNNLSQPSHAAVRNGNQMSAANSPANVSIQQPALSGDADPSDTQSSVQKILQEMMMNNQMNSPTSLVGVGSVVNDMKNVNGVLPTSNPGLNNGNCIGGNGATNSGSGMGGGGYGSMGSGLGQPAMVNGMRTAMGNNSIMNRRIGMASLALEQSMNGQQPQDMGNQLLSGLGAVNGFTAFKLPEFADGPARDGRHRMAKQVRGIMIHTLYLYICFYIIRKGKSDGW | 946 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 3096562 | 3102876 | + | CmoCh15G006390.1 | Cmo15g00639 | 398147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00639 | 946 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 1 | 901 | IPR029005 | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 99 | 172 | - | - | |
Cmo15g00639 | 946 | Pfam | LIM-domain binding protein | 337 | 591 | IPR029005 | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 676 | 731 | - | - | |
Cmo15g00639 | 946 | PANTHER | LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED | 1 | 901 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 306 | 328 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 234 | 271 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 590 | 632 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 306 | 323 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 78 | 172 | - | - | |
Cmo15g00639 | 946 | MobiDBLite | consensus disorder prediction | 594 | 632 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g02535 | Cmo15g00639 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01061 | Cmo-Chr1:8524802 | Cmo15g00639 | Cmo-Chr15:3096562 | 0 | dispersed | |
Cmo04g02533 | Cmo-Chr4:18609707 | Cmo15g00639 | Cmo-Chr15:3096562 | 2.10E-06 | dispersed | |
Cmo09g01076 | Cmo-Chr9:5826816 | Cmo15g00639 | Cmo-Chr15:3096562 | 0 | dispersed | |
Cmo15g00639 | Cmo-Chr15:3096562 | Cmo15g01487 | Cmo-Chr15:10080984 | 1.73E-113 | dispersed | |
Cmo15g00639 | Cmo-Chr15:3096562 | Cmo04g02535 | Cmo-Chr4:18611539 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00639 | - | - | csv:101218018 | 1401.73 |