Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00640 ATGGCACTCGATAACTGTGTTCAACTGGGCACCGCCGCCGCCGCCGCCTCCATGTGCGCCACCACTACCAGACTCAAATCTTATCCCTTTTGTTATAATCACCACCTAAACACAACCTTAACCCTTCGACGCAAATTGCCCATTTCAACTTCCGGAAACAAGTCCTTCTCCCCCTCTACAATCATTTCCACTTTCAGAAAATCCTTCTCCCTTGCGTGTCGAGCTCGTGGTGCCGTCGACGATGTGCCGGAGGTGACAGAGTCGAGTTGGGACAGTTTGGTGGTTGGGAGTCAAAAGGCCGTGCTGGTGGAGTTTTGGGCGCCGTGGTGTGGACCTTGCAAGATCATTGAGCCTGTGATTAAGGATTTGGCGCAGGAATATGCAGGCAAGATTGTGTGTTTGAAGCTCAATACAGATCTCAGCCCAAATGTGGCCTCAAAATATGGTATTAGAAGCATTCCCACGGTTCTGTTCTTCAAGAATGGGGAGAAAAGAGAGAGCGTCATTGGGGCTGTGCCCAGATCCACCTTGGCCGCCACCATTGACAAGTATACAGAGGTTTAA 564 50.53 MALDNCVQLGTAAAAASMCATTTRLKSYPFCYNHHLNTTLTLRRKLPISTSGNKSFSPSTIISTFRKSFSLACRARGAVDDVPEVTESSWDSLVVGSQKAVLVEFWAPWCGPCKIIEPVIKDLAQEYAGKIVCLKLNTDLSPNVASKYGIRSIPTVLFFKNGEKRESVIGAVPRSTLAATIDKYTEV 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3103449 3104334 - CmoCh15G006400.1 Cmo15g00640 398148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00640 187 Gene3D Glutaredoxin 82 186 - -
Cmo15g00640 187 TIGRFAM thioredoxin: thioredoxin 86 183 IPR005746 GO:0015035
Cmo15g00640 187 PANTHER GEO12009P1 49 184 - -
Cmo15g00640 187 SUPERFAMILY Thioredoxin-like 71 185 IPR036249 -
Cmo15g00640 187 CDD TRX_family 88 182 - -
Cmo15g00640 187 Pfam Thioredoxin 83 183 IPR013766 -
Cmo15g00640 187 PRINTS Thioredoxin family signature 101 109 - -
Cmo15g00640 187 PRINTS Thioredoxin family signature 109 118 - -
Cmo15g00640 187 PRINTS Thioredoxin family signature 149 160 - -
Cmo15g00640 187 ProSitePatterns Thioredoxin family active site. 102 120 IPR017937 -
Cmo15g00640 187 PANTHER THIOREDOXIN M-TYPE PROTEIN 49 184 - -
Cmo15g00640 187 ProSiteProfiles Thioredoxin domain profile. 60 186 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00640 K03671 trxA; thioredoxin 1 - csv:101218257 248.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02534 Cmo15g00640 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01367 Cmo-Chr11:9559177 Cmo15g00640 Cmo-Chr15:3103449 6.47E-30 dispersed
Cmo15g00640 Cmo-Chr15:3103449 Cmo16g00845 Cmo-Chr16:4457627 5.40E-46 dispersed
Cmo15g00640 Cmo-Chr15:3103449 Cmo04g02534 Cmo-Chr4:18609825 8.15E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00640 Cmo_Chr15 FPKM 6.803235 7.455968 4.955272 5.419255 4.412515 4.825342 3.164156 5.700335 6.849057 5.262186