Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00643 ATGTCTTCGAGGGATCCTAACGCCATCTTCAGTGGAGGCGGTATCAGTTTTCTCAATGGAAATCAGACTGGAAAGTTCAGCTATGGGTATTCTAGTTTCAAAGGAAAAAGGGCTTCGATGGAGGACTTCTATGAAACAAGAATGTCTGAAGTTGACGGGCAGATGGTCGCTTTTTTTGGTGTTTTTGATGGTCATGGAGGTTCCAGAACAGCTGAATACCTTAAGCGCAATCTTTTCAAGAACCTAAGTAGCCACCCAAACTTTATCAAAGACACAAAGACTGCCATTATTGAGGTCTTTAAACAGACCGATGCCGATTATATTAACGAAGAGAAAGGGCAGCAGAAAGATGCTGGCTCAACTGCATCAACTGCTGTTCTGTTAGGGGATCGTCTCCTCGTTGCAAATGTTGGGGATTCCAGAGTAGTTGCGTCTAGAGCTGGTTCAGATACATTATTCATTTGTTGCACAGCTATTCCCCTCTCTATTGATCACAAACCTGATAGATCAGATGAACGAGAAAGGATTGAACAAGCTGGAGGTTTCATTATTTGGGCAGGAACTTGGAGGGTTGGTGGTATTCTAGCCGTTTCGCGTGCCTTTGGAGATAAGCTACTCAAACCATATGTTGTTGCTGATCCTGAAATACAGGAAGAAGAAATTGACGGTGTAGATTTTATTATCATTGCAAGTGATGGACTTTGGAATGTTTTATCAAATGAGGATGCTGTAGCATTGGTGCAACACATTCAAGATACAGAAGTGGCATCAAGAACACTAATCCAAGAAGCCTATGCTCGAGGGAGTTCCGACAACATTACATGTGTCATTGTACGATTTGAATATGTAACTTATCCTAGCTGTGCTCAGGACGTTCCTGCTCAATCTGTAGACTGCTTAAAACGTTGCCTTTATATGTATATGACAGACTGA 933 42.12 MSSRDPNAIFSGGGISFLNGNQTGKFSYGYSSFKGKRASMEDFYETRMSEVDGQMVAFFGVFDGHGGSRTAEYLKRNLFKNLSSHPNFIKDTKTAIIEVFKQTDADYINEEKGQQKDAGSTASTAVLLGDRLLVANVGDSRVVASRAGSDTLFICCTAIPLSIDHKPDRSDERERIEQAGGFIIWAGTWRVGGILAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVLSNEDAVALVQHIQDTEVASRTLIQEAYARGSSDNITCVIVRFEYVTYPSCAQDVPAQSVDCLKRCLYMYMTD 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3121936 3126309 + CmoCh15G006430.1 Cmo15g00643 398151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00643 310 SMART PP2C_4 17 278 IPR001932 -
Cmo15g00643 310 Pfam Protein phosphatase 2C 28 273 IPR001932 -
Cmo15g00643 310 PANTHER ALPHABET, ISOFORM E-RELATED 4 281 - -
Cmo15g00643 310 Gene3D - 20 283 IPR036457 -
Cmo15g00643 310 ProSiteProfiles PPM-type phosphatase domain profile. 27 280 IPR001932 -
Cmo15g00643 310 SMART PP2C_SIG_2 39 280 IPR001932 -
Cmo15g00643 310 CDD PP2Cc 26 280 IPR001932 -
Cmo15g00643 310 ProSitePatterns PPM-type phosphatase domain signature. 58 66 IPR000222 GO:0043169
Cmo15g00643 310 SUPERFAMILY PP2C-like 23 281 IPR036457 -
Cmo15g00643 310 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 4 281 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g02531 Cmo15g00643 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01732 Cmo-Chr1:12942300 Cmo15g00643 Cmo-Chr15:3121936 2.42E-127 dispersed
Cmo09g00390 Cmo-Chr9:1719359 Cmo15g00643 Cmo-Chr15:3121936 8.28E-126 dispersed
Cmo15g00643 Cmo-Chr15:3121936 Cmo16g00070 Cmo-Chr16:317145 4.33E-112 dispersed
Cmo20g00992 Cmo-Chr20:5681516 Cmo15g00643 Cmo-Chr15:3121936 1.73E-25 dispersed
Cmo15g00643 Cmo-Chr15:3121936 Cmo04g02531 Cmo-Chr4:18596607 1.92E-173 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00643 K17506 - csv:101220053 498.049