Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00644 ATGGTGAACGATACTGAGTATTACGACATTCTCGGTGTTCGTCCTTCTGCTTCCGAGGACGAGATTCGTAAGGCCTATTATCTTAAGGCGAAGCAAGTCCATCCGGATAAGAATTTGAATGATCCTCAAGCTGCTGAAAGGTTTCAGGCAAGTGAAGCCTATCAAGTTTTGAGTGATGCAGTCCAAAGAGATGCATATGATAGGAACGGGAAGCACAGTATTACTAGGGAATCCATGCTTGACCCTACTGCTGTCTTTGCACTTCTATTTGGAAGTGAATTGTTTGAGGACTATATTGGACATTTAGCCGTAGCATCAATGGCTTCATCTGAATTAGAGAGCGAAACTGGTAATTCAGAGAGATTACAAGATAAGTTGAAGGCAAGTGACAAAGACGGATTCTTACGGCATGCTGAATCTGAAGCCAAAAGACTCTCTAATGCGGGTGCTTTTCAGTTGTTACAGCTTCAAGATGATATTTGCCGGCAGTATAAAATGGATGGTAGTGGCCCTGAAAATGATATTGAATCGCATATTAGATTGAATAAAGACACATTCCTCAATTCTTTGTGGAAGCTTAACGTGGTGGACATAGAACTGACTCTTATAAATGTGTGCCAGATGGTACTACGGGATAATACTGTGAAAAGGGAAGAACTAAAAGCTCGTGCTCTGGCTCTAAAGATTCTTGGAAATATATTCCAGGAGAAGCAAGCACAAAATGGTGGAACATCAAGAAAGAAAAGTGCTGCTGCAGTAGATGACGATGGAACGAGTTCAGAGAGCAGCGACGATGAGGATGATCCCCGAAGACCAATATCTTATCGAACTCCTTTTCTTACTCAGGCAAGTTAA 855 41.87 MVNDTEYYDILGVRPSASEDEIRKAYYLKAKQVHPDKNLNDPQAAERFQASEAYQVLSDAVQRDAYDRNGKHSITRESMLDPTAVFALLFGSELFEDYIGHLAVASMASSELESETGNSERLQDKLKASDKDGFLRHAESEAKRLSNAGAFQLLQLQDDICRQYKMDGSGPENDIESHIRLNKDTFLNSLWKLNVVDIELTLINVCQMVLRDNTVKREELKARALALKILGNIFQEKQAQNGGTSRKKSAAAVDDDGTSSESSDDEDDPRRPISYRTPFLTQAS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3127366 3130856 + CmoCh15G006440.1 Cmo15g00644 398152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00644 284 CDD DnaJ 6 59 IPR001623 -
Cmo15g00644 284 Pfam X-domain of DnaJ-containing 147 244 IPR026894 -
Cmo15g00644 284 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 131 - -
Cmo15g00644 284 SMART dnaj_3 5 62 IPR001623 -
Cmo15g00644 284 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 149 283 - -
Cmo15g00644 284 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 131 - -
Cmo15g00644 284 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 149 283 - -
Cmo15g00644 284 MobiDBLite consensus disorder prediction 239 284 - -
Cmo15g00644 284 Pfam DnaJ domain 6 67 IPR001623 -
Cmo15g00644 284 PRINTS DnaJ domain signature 62 81 IPR001623 -
Cmo15g00644 284 PRINTS DnaJ domain signature 26 41 IPR001623 -
Cmo15g00644 284 PRINTS DnaJ domain signature 8 26 IPR001623 -
Cmo15g00644 284 PRINTS DnaJ domain signature 42 62 IPR001623 -
Cmo15g00644 284 ProSiteProfiles dnaJ domain profile. 6 70 IPR001623 -
Cmo15g00644 284 Gene3D DnaJ domain 1 85 IPR036869 -
Cmo15g00644 284 SUPERFAMILY Chaperone J-domain 2 100 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00644 - - - csv:101219818 448.743
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02530 Cmo15g00644 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00006 Cmo-Chr9:18791 Cmo15g00644 Cmo-Chr15:3127366 5.61E-54 dispersed
Cmo15g00644 Cmo-Chr15:3127366 Cmo20g00840 Cmo-Chr20:4206891 5.46E-64 dispersed
Cmo15g00644 Cmo-Chr15:3127366 Cmo04g02530 Cmo-Chr4:18591952 4.05E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1178 . Blo12g00834 . Bda03g00342 . Bpe04g00302 . . Cmo04g02530 Cmo15g00644 . . . . . . Cpe13g00655 Bhi04g01834 . . . . . . . . . . . . . . . Cone17ag0805 Cone20ag0410 . . . Cme03g00430 . Blo18g00226 . Bda01g01383 Bpe02g01596 . Bma01g00878 . . . . . . Car04g02328 Car15g00585 Cpe01g02091 . . . . . . . . . . . . . . . . . Chy03g00571 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00644 Cmo_Chr15 FPKM 1.649697 3.403314 0.630242 0.105745 5.908601 5.226635 7.17617 0.0 0.073353 0.0