Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00645 ATGGTTGGTAAAGAAAACTTGAGGACTGAGGACTTGAACTTGTGCTTTGAAAAACTAATGATGCTTGTTGATGGTGGTGGTGATGGAATCGACGTTGGTGCTAAAGGGGTTAAAATGGACGGTGGGGTGATTGCCGGATGGAAGGACATTCCTATGGAGCTTCTCTTGCAAATTATATCGCTTGTTGATGATCGAACTGTTATTGTAGCCTCTGGCGTGTGTTGTGGATGGAGGGATGCTATTTGCTTTGGCCTCACCCATCTTTCTCTATCATGGTGCAAAAAGAACATGAACAACTTGGTCCTATCTCTTGCTCCTAAATTTGCAAAGCTGCAAACTCTAATCTTGCGCCAGGACAAACCCCAGCTCGCCGACGATGCTGTTGAGACCATTGCTAGTTACTGTCATGATCTGCAGGTCCTGGACCTGAGAAAAAGTTCCAAGCTCAGTGATCTTTCCCTGTATGCCCTGGCTCATGGTTGCCCTGATCTTGTAAAACTTAATATTAGCGGTTGTACTGCATTCAGTGACACTGCATTGGCTTATCTAGCCAGTTATTGCAGAAAGCTAAAAGTTCTTAATCTTTGTAGCTGTGTCAAGGCTGCATCTGACACTGCATTGCAGGCTATTGGACAATACTGTAATAGTTTGCAGTCCGTAAATCTTGGATGGTGTGAAAATGTGAGCGATGTGGGTGTGATGAGCTTGGCGTATGGATGTCGTGATCTTAGAACCCTGGACTTGTGTGGCTGTGTCCTAATTACAGATGATAGTGTGATTGCTATGGCAAATATGTGCCCTCATCTGAGGTCACTTGGGCTCTACTATTGTCAGAACATAACAGACAGAGCAATGTACTCTTTGGCACATAGCTGTATAAAGCACAAGCCAACAAAATGGGGAACAACGGGGAAGGGAAAGAATGATGATGATGGACTTAGAACGCTTAACATCAGCCAATGCACAGCTCTTACTCCCCCTGCCGTTCAGGCTGTTTGTGACTCATTTCCTGCCCTCCACACCTGCTCCGGCCGCCATTCCCTCATCATGAGTGGCTGTCTAAATTTGATGTCTGTGCATTGTGCTTGTGCAGTCCAAGCTCACCGTGCCCCCTCTGCTTTTCCCTATCCAGCTCATTGA 1140 46.05 MVGKENLRTEDLNLCFEKLMMLVDGGGDGIDVGAKGVKMDGGVIAGWKDIPMELLLQIISLVDDRTVIVASGVCCGWRDAICFGLTHLSLSWCKKNMNNLVLSLAPKFAKLQTLILRQDKPQLADDAVETIASYCHDLQVLDLRKSSKLSDLSLYALAHGCPDLVKLNISGCTAFSDTALAYLASYCRKLKVLNLCSCVKAASDTALQAIGQYCNSLQSVNLGWCENVSDVGVMSLAYGCRDLRTLDLCGCVLITDDSVIAMANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKHKPTKWGTTGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLMSVHCACAVQAHRAPSAFPYPAH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3131902 3135443 - CmoCh15G006450.1 Cmo15g00645 398153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00645 379 SUPERFAMILY RNI-like 81 338 - -
Cmo15g00645 379 Pfam Leucine Rich repeat 266 289 IPR001611 GO:0005515
Cmo15g00645 379 Pfam Leucine Rich repeat 240 263 IPR001611 GO:0005515
Cmo15g00645 379 Pfam Leucine Rich repeat 213 237 IPR001611 GO:0005515
Cmo15g00645 379 SMART LRR_CC_2 135 160 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 266 291 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 161 186 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 108 134 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 240 265 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 214 239 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 187 213 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 313 335 IPR006553 -
Cmo15g00645 379 SMART LRR_CC_2 82 107 IPR006553 -
Cmo15g00645 379 Gene3D - 46 81 - -
Cmo15g00645 379 SUPERFAMILY F-box domain 44 82 IPR036047 GO:0005515
Cmo15g00645 379 Pfam F-box domain 47 82 IPR001810 GO:0005515
Cmo15g00645 379 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 361 - -
Cmo15g00645 379 Gene3D Ribonuclease Inhibitor 82 369 IPR032675 -
Cmo15g00645 379 PANTHER UNCHARACTERIZED 1 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00645 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - csv:101220292 680.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02528 Cmo15g00645 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02528 Cmo-Chr4:18589206 Cmo15g00645 Cmo-Chr15:3131902 3.25E-106 dispersed
Cmo15g00645 Cmo-Chr15:3131902 Cmo08g01154 Cmo-Chr8:7374345 7.37E-19 dispersed
Cmo15g00645 Cmo-Chr15:3131902 Cmo04g02527 Cmo-Chr4:18587840 2.34E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00645 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0