Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00648 ATGGGTGTGTCTGCGGCCTCAATACTCAATCGCCTTCTTTCCCATAAGAACCTCAGCGCCAGAACCCAACCCACCGGCGCCAAAGCCGCTGCCACCACAATCCTCAAATACCTGGAAGAGGGTCGCCTCCGAAAAGCTGTCTCGGTTCTGTTTGATTCCCCCTTCCCCTTTCCTCATCCTTTGTATGCTCGCCTCTTCCAAATTTGTTCTTCCACTCGCGCTCTTGTTGAAGCTCGAAAGGTTGAATCTCATTTGGTTACGTTTTGCCCCACGCCGCCGATTTTCTTGTTGAATCGGGCGATTGAGGCGTATGGTAAATGTGGGTGTTTGGAGGATGCGAGGGAGCTGTTCGAGGAAATGCCTCAGAGAGATGGGGGATCTTGGAATGCGATGTTAACGGCGTATACGCAGAATGGGTTTGCTTTGGAATCTTTGAATTTATTTCTGAATATGAATAAATCCGGTGTTTATGCTACTGAAATAACTTTAGCTAGTGTACTTGGGTCTTGCGGTTCTGTTTTGGCTCTTCACCTCTCTAGGCAAGTTCACGGGCATATTGTGAAATCTGGCTTTGTTGGCAATGTGATTCTTGAGAGCTCGCTTGTTGATGTCTATGGAAAGTGTAGGCTTATGAATGATGCACGTAGCATGTTTGATGAAATCCAGAATCGAAATGATGTTTCCTGGAATGTTATTGTTAGGCGCTATCTTGAGGTGGGCGATGGTAAAATGGCAGTGTCAATGTTTTTCCAAATGTTCCGAGAGGCAGTGATGCCATTGAGTTTTACTTTTTCCAATGCTCTGATTGCTTGTTCAAGTATGGCAGCACTCATAGAAGGTAGGCAAATTCATGGTATTGTAGTGAAAGTAGGTTTGGAAGAGGATGAAGTTATTTCGAGCTCTTTAATTGACATGTATGTGAAATGTGGAACATTAGACAATGCTCACCAAGTATTTACCCAACCCAGTTCCAGAAATCTTATTTCTTGGACTTCCATGGTATATGGATATGCAATGTCTGGGGAAGTTCTAAAAGCTAGGGAGCTTTTCAATGAAATGCCCGAACGCAATGTGATTTCGTGGAATGCTATGTTGGCAGGGTATATTCATTCCGGTCAATGGAAAGAGGCACTCGACTTTGTCCACTTGATGCACAATTCGATTAAGGATGTCGATCACGTTACTCTTCGCCTGATATTGAATGTGTGTACTGGCCTTTTAGATGTTGAAAGAGGAAAGCAAGTTCATGGTTTTATCTATAGAATTGGTTTCTATGCTAATCTCTATATTGGTAATGCCCTCCTTGACATGTATGGTAAATGTGGGAACTTGAAAAGTGCCCGAGTTTGGTTCTACCAAATGAGTCAATGGCGGGATAAAGTCTCCTGGAATGCTCTACTCACTACCTATGCTCGTCACGGCATGAGTGAACAGGCTATGACAATTTTCTCAGAGATGCAATGGGAAGCAGCTCCTAGTAAATTTACCTTTGCAACCCTTTTAGCAGCCTGCGCAAACACCTTTGCATTAGATCAAGGCAAACAAATCCATGGCTTCATGGTTAGAAATAATTATGAGATAGACGTTGCAGTTAGTGGAGCTTTAGTTGATATGTACTGTAAATGCCGACAACTTGAGTACGCTCTCAAGGTTTTTGAAAATGCAGCTTCGCGCGATGTGGTTCTGTGGAACTCCATAATTTTAGGATGTTGTCACAACAGAAGGGGTATGATAGTAATCGAATTGTTTGAAATGATGATGATGGAGAAAGGCATTAACCCGGACCATGTGACCTTCCAAGGTATTTTGCTTGCTTGTGTCTATGAAAATCTCGTTGAGTTAGGTAGGCAGTATTTCGATTCAATGATTGACAAGTTCTGTATCATACCTCGATTAGAGCACTATGAATGTGTGATCGAGCTCTATGGCCGACATGGAAACATGGATGAGCTCGAAAAATTTATCAACAATATGCCCTTTGATCCTACTGTTCCAATGCTAGAAAAAGTCCTTGATGCATGTAGAAAACACGGACACTCGAGGTTGGGAGAATGGGTAGCTATTAGACTAAAGGAGCAGAATCTTTACAAGTGA 2094 42.93 MGVSAASILNRLLSHKNLSARTQPTGAKAAATTILKYLEEGRLRKAVSVLFDSPFPFPHPLYARLFQICSSTRALVEARKVESHLVTFCPTPPIFLLNRAIEAYGKCGCLEDARELFEEMPQRDGGSWNAMLTAYTQNGFALESLNLFLNMNKSGVYATEITLASVLGSCGSVLALHLSRQVHGHIVKSGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVGDGKMAVSMFFQMFREAVMPLSFTFSNALIACSSMAALIEGRQIHGIVVKVGLEEDEVISSSLIDMYVKCGTLDNAHQVFTQPSSRNLISWTSMVYGYAMSGEVLKARELFNEMPERNVISWNAMLAGYIHSGQWKEALDFVHLMHNSIKDVDHVTLRLILNVCTGLLDVERGKQVHGFIYRIGFYANLYIGNALLDMYGKCGNLKSARVWFYQMSQWRDKVSWNALLTTYARHGMSEQAMTIFSEMQWEAAPSKFTFATLLAACANTFALDQGKQIHGFMVRNNYEIDVAVSGALVDMYCKCRQLEYALKVFENAASRDVVLWNSIILGCCHNRRGMIVIELFEMMMMEKGINPDHVTFQGILLACVYENLVELGRQYFDSMIDKFCIIPRLEHYECVIELYGRHGNMDELEKFINNMPFDPTVPMLEKVLDACRKHGHSRLGEWVAIRLKEQNLYK 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3141955 3144048 - CmoCh15G006480.1 Cmo15g00648 398156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 30 174 IPR011990 GO:0005515
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 408 509 IPR011990 GO:0005515
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 281 407 IPR011990 GO:0005515
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 609 695 IPR011990 GO:0005515
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 175 280 IPR011990 GO:0005515
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 123 IPR002885 -
Cmo15g00648 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 562 694 - -
Cmo15g00648 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 472 565 - -
Cmo15g00648 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 474 - -
Cmo15g00648 697 TIGRFAM PPR: pentatricopeptide repeat domain 101 123 IPR002885 -
Cmo15g00648 697 TIGRFAM PPR: pentatricopeptide repeat domain 359 386 IPR002885 -
Cmo15g00648 697 TIGRFAM PPR: pentatricopeptide repeat domain 328 358 IPR002885 -
Cmo15g00648 697 TIGRFAM PPR: pentatricopeptide repeat domain 461 487 IPR002885 -
Cmo15g00648 697 TIGRFAM PPR: pentatricopeptide repeat domain 561 595 IPR002885 -
Cmo15g00648 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 474 - -
Cmo15g00648 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 472 565 - -
Cmo15g00648 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 562 694 - -
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Cmo15g00648 697 Gene3D Tetratricopeptide repeat domain 510 608 IPR011990 GO:0005515
Cmo15g00648 697 Pfam PPR repeat 534 553 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 199 225 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 127 156 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 227 254 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 359 385 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 432 455 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 635 658 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 328 358 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat 100 123 IPR002885 -
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cmo15g00648 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 594 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat family 558 606 IPR002885 -
Cmo15g00648 697 Pfam PPR repeat family 459 506 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00648 - - - csv:101210115 1228.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00648 Cmo-Chr15:3141955 Cmo03g00114 Cmo-Chr3:1585986 9.26E-39 dispersed
Cmo15g00648 Cmo-Chr15:3141955 Cmo14g00188 Cmo-Chr14:857606 1.35E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012345 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00648 Cmo_Chr15 FPKM 36.041752 38.498783 30.838955 29.785063 25.748188 26.912724 25.602669 29.538536 27.523888 28.257498