Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00650 ATGCGGTTAGATTGGCAAGCCAAGTGGGACCAGATGGTCTGTGGTCTTAGTCCAGCACGAAAACGCGGTTCTACGCTCCAAAACGCATCAGCCACTCCCCAAAGTCTCCCCCCACTGAAGACTTTGAAAATGTCAAACCCGGAGACCCAAACCAAAGAAAGAATTCATAGGAATTCGTCTATCACGGGACTCCGTGGAGATTCAAGGACAGAAGACCCTATTGGGGTGCAAAAGATTCAGAGAGATATGTCTACCAATGCTGCTGCTGCTTGCGCTGAGAGAGCCACAAATGATGTGCTTATAGCTCCTGATTGGGCCATAAATATTGAGCTCTGTGATATTATTAACATGGATCCCAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGCCTGGCTAGCAAAAATCCTAAAACACAACTTCTAGCTCTCTATGCATTGGATGCTCTAAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATCGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAAAAGAAGCCTGATTCAACTGTTCGGGACAAGATATTAACTTTGGTAGATGCATGGCAAGCAACATTTGGGGGTGGCTCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCGATTTCCACCAAGACGAGAGAACGTTGGGCAGTTCGTAAGTCCACCTCAGATACACCCTGTTATTGAGCAACATGTTTCACCCTATGATGATCTTGCTGCTCAGGTTTCTCTTCAGTCTGATGCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGGCTAGCAGATGTTTTGTTGGAAGTGCTCGGCGCGTTGGATTCGAAGACTCCAGAGGCTTTGAAGCAAGAAGTTATTGTCGATCTTGTTGATCAATGCCGTTCCTACCAGAGCCGTGTCGTGATACTTGTGAATGAGTCAACAGATGAGGAACTGTTATGTCAAGGATTGGTGTTGAATGACAGTCTGCAGCGTGTACTCAGCTACCATGATGACATTGCAAAAGGAACGTTTACAACGGAAGCTAGAAGAACAGAGCCTCCTCCCGTTCCATCGGTTCCATATATGGACCCCGAGGAGGATGAGTCGGAAGATGATTTTACACCATTAGCTCGCAGGTCAACAAGAGATCACATTTATGCAAGGGACAGGAAACTGGCGAACGGTCAATCATCTCGAGTAAGTCCGCTTCCTTCACCCTCATTAAAGAAGACAACTGGTGCAGAAATGATCGATCATCTTAGCGGCGATGTGTACAAGCGTGAAGGGTCTCCAAGGACAGTAGAGCCACCATCTTATACACCTTCACCAACAACTTCATCTTCCTCACCTTTCTACACCAGACAGCCTTTATTCGTCGAGCCACCCCCAAGAAGCATGTCCACAAATCCGCCCTCCGCAACACCAAGCTCCCTCCCTCCCCCACCCTCAAGATATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTTCGCCCCATTTGAGCAATGGCTATAATTCTTATGACAAGATAGTCGGGAATACCAAGAATCTGTCGCTCGGTCCTTCCACCCCGATGAGAGCTGCAGAGCATGAGGAGGCCCTTTTCAAAGATCTGATGGATTTTTCCAAGGCCAACACATCTTCATCCTCCAAATCCAACCGACCATTCTGA 1719 46.19 MRLDWQAKWDQMVCGLSPARKRGSTLQNASATPQSLPPLKTLKMSNPETQTKERIHRNSSITGLRGDSRTEDPIGVQKIQRDMSTNAAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKNPKTQLLALYALDALSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVRDKILTLVDAWQATFGGGSKGKYPQYYAAYNELKNAGFRFPPRRENVGQFVSPPQIHPVIEQHVSPYDDLAAQVSLQSDASGLSLPEIQNAQGLADVLLEVLGALDSKTPEALKQEVIVDLVDQCRSYQSRVVILVNESTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFTTEARRTEPPPVPSVPYMDPEEDESEDDFTPLARRSTRDHIYARDRKLANGQSSRVSPLPSPSLKKTTGAEMIDHLSGDVYKREGSPRTVEPPSYTPSPTTSSSSPFYTRQPLFVEPPPRSMSTNPPSATPSSLPPPPSRYNQRQQYFEQQKAVTGGTSPHLSNGYNSYDKIVGNTKNLSLGPSTPMRAAEHEEALFKDLMDFSKANTSSSSKSNRPF 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3149603 3153742 + CmoCh15G006500.1 Cmo15g00650 398158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00650 572 MobiDBLite consensus disorder prediction 493 523 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 354 523 - -
Cmo15g00650 572 ProSiteProfiles GAT domain profile. 263 351 IPR004152 GO:0035091|GO:0043130
Cmo15g00650 572 CDD VHS 96 219 - -
Cmo15g00650 572 SUPERFAMILY ENTH/VHS domain 90 226 IPR008942 -
Cmo15g00650 572 Pfam VHS domain 92 221 IPR002014 GO:0035091|GO:0043130
Cmo15g00650 572 Pfam GAT domain 278 352 IPR004152 GO:0035091|GO:0043130
Cmo15g00650 572 SUPERFAMILY GAT-like domain 238 352 - -
Cmo15g00650 572 CDD GAT_GGA_like_plant 271 349 - -
Cmo15g00650 572 Gene3D - 76 241 IPR008942 -
Cmo15g00650 572 PIRSF TOM1 76 571 IPR014645 -
Cmo15g00650 572 Gene3D - 261 358 IPR038425 -
Cmo15g00650 572 PANTHER TOM1-LIKE PROTEIN 86 571 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cmo15g00650 572 ProSiteProfiles VHS domain profile. 95 225 IPR002014 GO:0035091|GO:0043130
Cmo15g00650 572 MobiDBLite consensus disorder prediction 473 492 - -
Cmo15g00650 572 PANTHER TOM1-LIKE PROTEIN 4 86 571 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 21 46 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 382 400 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 449 464 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 404 418 - -
Cmo15g00650 572 MobiDBLite consensus disorder prediction 20 72 - -
Cmo15g00650 572 SMART VHS_2 88 221 IPR002014 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00650 - - - csv:101219096 736.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01071 Cmo-Chr1:8605890 Cmo15g00650 Cmo-Chr15:3149603 1.04E-151 dispersed
Cmo04g02522 Cmo-Chr4:18562749 Cmo15g00650 Cmo-Chr15:3149603 5.13E-169 dispersed
Cmo12g00214 Cmo-Chr12:1410173 Cmo15g00650 Cmo-Chr15:3149603 1.20E-83 dispersed
Cmo15g00650 Cmo-Chr15:3149603 Cmo05g00626 Cmo-Chr5:3143769 6.07E-89 dispersed
Cmo15g00650 Cmo-Chr15:3149603 Cmo09g01059 Cmo-Chr9:5751596 1.40E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00650 Cmo_Chr15 FPKM 3.509132 0.0 0.0 3.895564 0.0 0.0 3.706395 1.419899 0.0 0.0